Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   OO774_RS09705 Genome accession   NZ_AP026763
Coordinates   2057884..2058471 (-) Length   195 a.a.
NCBI ID   WP_264901908.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2052884..2063471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS09685 (VspSTUT11_18180) - 2052897..2054162 (-) 1266 WP_264901903.1 YdgA family protein -
  OO774_RS09690 (VspSTUT11_18190) - 2054349..2056292 (+) 1944 WP_264901904.1 ATP-binding protein -
  OO774_RS09695 (VspSTUT11_18200) - 2056289..2056786 (+) 498 WP_264901906.1 response regulator -
  OO774_RS09700 (VspSTUT11_18210) - 2056990..2057535 (+) 546 WP_264901907.1 hypothetical protein -
  OO774_RS09705 (VspSTUT11_18220) tfoX 2057884..2058471 (-) 588 WP_264901908.1 TfoX/Sxy family DNA transformation protein Regulator
  OO774_RS09710 (VspSTUT11_18230) - 2058841..2059761 (+) 921 WP_264901910.1 HDOD domain-containing protein -
  OO774_RS09715 (VspSTUT11_18240) - 2059873..2060778 (+) 906 WP_264901911.1 lysine exporter LysO family protein -
  OO774_RS09720 (VspSTUT11_18250) - 2060989..2061501 (+) 513 WP_264901913.1 hypothetical protein -
  OO774_RS09725 (VspSTUT11_18260) panP 2061806..2063452 (+) 1647 WP_264901915.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22727.10 Da        Isoelectric Point: 8.0017

>NTDB_id=96814 OO774_RS09705 WP_264901908.1 2057884..2058471(-) (tfoX) [Vibrio sp. STUT-A11]
MDMTDQAFFKYVRNFSQYQKRSMFGGIGLFCDEAMFALVSNDCCYLRGGNRLDEELIRLNCEKYKHVKRQTTATVNYYDV
TDLFESGFSGLDELLKRSIEYSVKERKYQKSSASRRLRDLPNMQLTLERMVKKAGVDDVEAFLELGPVEVFNKVRQAYGN
DVDVKLLWKFAGAIDGVHWKLIQEPRKKQLLELCD

Nucleotide


Download         Length: 588 bp        

>NTDB_id=96814 OO774_RS09705 WP_264901908.1 2057884..2058471(-) (tfoX) [Vibrio sp. STUT-A11]
ATGGACATGACAGACCAAGCTTTTTTTAAGTACGTACGCAATTTTAGCCAGTATCAGAAACGTTCCATGTTCGGCGGCAT
CGGTTTATTTTGCGATGAAGCTATGTTTGCACTTGTTAGTAACGATTGTTGTTATTTACGTGGAGGTAATAGGCTAGACG
AAGAACTGATTCGGCTAAATTGTGAAAAATATAAGCACGTCAAGAGACAAACGACGGCAACCGTTAACTACTATGATGTA
ACGGACCTATTTGAATCCGGCTTTTCCGGGTTGGATGAACTGTTAAAAAGATCAATTGAGTACTCAGTTAAGGAACGCAA
ATACCAAAAATCTTCAGCGAGTAGACGGCTGAGAGATCTACCTAACATGCAACTGACGCTCGAGCGTATGGTGAAAAAAG
CCGGTGTTGATGATGTTGAGGCATTCTTGGAACTCGGGCCTGTGGAAGTTTTCAATAAAGTTAGACAGGCCTACGGCAAC
GATGTAGATGTTAAACTGTTGTGGAAGTTTGCTGGTGCGATAGATGGAGTGCACTGGAAGCTAATTCAAGAGCCACGAAA
AAAACAGTTGTTGGAACTGTGTGATTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

88.718

100

0.887
  tfoX Vibrio campbellii strain DS40M4

85.641

100

0.856
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

69.792

98.462

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

69.792

98.462

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

69.792

98.462

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

69.792

98.462

0.687
  tfoX Vibrio cholerae strain A1552

69.792

98.462

0.687
  tfoX Aliivibrio fischeri ES114

56.771

98.462

0.559

Multiple sequence alignment