Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MKZ05_RS11320 Genome accession   NZ_CP150255
Coordinates   2256142..2256435 (-) Length   97 a.a.
NCBI ID   WP_212045910.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0277     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2251142..2261435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ05_RS11270 (MKZ05_11270) sinR 2251305..2251640 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  MKZ05_RS11275 (MKZ05_11275) - 2251708..2252508 (-) 801 WP_003217403.1 TasA family protein -
  MKZ05_RS11280 (MKZ05_11280) - 2252566..2253138 (-) 573 WP_003217306.1 signal peptidase I -
  MKZ05_RS11285 (MKZ05_11285) tapA 2253190..2253717 (-) 528 WP_212045914.1 amyloid fiber anchoring/assembly protein TapA -
  MKZ05_RS11290 (MKZ05_11290) - 2254017..2254295 (+) 279 WP_249118272.1 DUF3889 domain-containing protein -
  MKZ05_RS11295 (MKZ05_11295) - 2254329..2254523 (-) 195 WP_034620826.1 YqzE family protein -
  MKZ05_RS11300 (MKZ05_11300) comGG 2254583..2254966 (-) 384 WP_212045913.1 competence type IV pilus minor pilin ComGG -
  MKZ05_RS11305 (MKZ05_11305) comGF 2254963..2255463 (-) 501 WP_212045912.1 competence type IV pilus minor pilin ComGF -
  MKZ05_RS11310 (MKZ05_11310) comGE 2255402..2255719 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  MKZ05_RS11315 (MKZ05_11315) comGD 2255703..2256149 (-) 447 WP_212045911.1 competence type IV pilus minor pilin ComGD -
  MKZ05_RS11320 (MKZ05_11320) comGC 2256142..2256435 (-) 294 WP_212045910.1 competence type IV pilus major pilin ComGC Machinery gene
  MKZ05_RS11325 (MKZ05_11325) comGB 2256452..2257492 (-) 1041 WP_212045909.1 competence type IV pilus assembly protein ComGB -
  MKZ05_RS11330 (MKZ05_11330) comGA 2257473..2258543 (-) 1071 WP_249118252.1 competence type IV pilus ATPase ComGA Machinery gene
  MKZ05_RS11335 (MKZ05_11335) - 2258721..2259593 (-) 873 WP_003217438.1 STAS domain-containing protein -
  MKZ05_RS11345 (MKZ05_11345) - 2259817..2260197 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  MKZ05_RS11350 (MKZ05_11350) - 2260410..2260652 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10709.71 Da        Isoelectric Point: 7.9308

>NTDB_id=968084 MKZ05_RS11320 WP_212045910.1 2256142..2256435(-) (comGC) [Bacillus sp. FSL M8-0277]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELVKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=968084 MKZ05_RS11320 WP_212045910.1 2256142..2256435(-) (comGC) [Bacillus sp. FSL M8-0277]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCGATTCTTTTACTGATTACCATTCC
GAATATTACTCGTCACCACCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACTCAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCATCTTTAGCTGAATTAGTAAAAGAAGGCTATGTTAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment