Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKY17_RS28015 Genome accession   NZ_CP150254
Coordinates   5794552..5795079 (-) Length   175 a.a.
NCBI ID   WP_076368498.1    Uniprot ID   -
Organism   Peribacillus sp. FSL P2-0133     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5789552..5800079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY17_RS27995 (MKY17_27995) rplI 5790624..5791073 (-) 450 WP_098370316.1 50S ribosomal protein L9 -
  MKY17_RS28000 (MKY17_28000) - 5791070..5793040 (-) 1971 WP_098370317.1 DHH family phosphoesterase -
  MKY17_RS28005 (MKY17_28005) - 5793082..5794029 (-) 948 WP_339201178.1 YybS family protein -
  MKY17_RS28010 (MKY17_28010) rpsR 5794265..5794504 (-) 240 WP_034316147.1 30S ribosomal protein S18 -
  MKY17_RS28015 (MKY17_28015) ssbA 5794552..5795079 (-) 528 WP_076368498.1 single-stranded DNA-binding protein Machinery gene
  MKY17_RS28020 (MKY17_28020) rpsF 5795149..5795433 (-) 285 WP_034316153.1 30S ribosomal protein S6 -
  MKY17_RS28025 (MKY17_28025) ychF 5795628..5796728 (-) 1101 WP_076368500.1 redox-regulated ATPase YchF -
  MKY17_RS28030 (MKY17_28030) - 5796896..5797093 (-) 198 WP_034316158.1 DUF951 domain-containing protein -
  MKY17_RS28035 (MKY17_28035) - 5797114..5797950 (-) 837 WP_098370320.1 mechanosensitive ion channel family protein -
  MKY17_RS28040 (MKY17_28040) yyaC 5798342..5798977 (+) 636 WP_098370321.1 spore protease YyaC -
  MKY17_RS28045 (MKY17_28045) - 5799034..5799735 (-) 702 WP_076368504.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19388.07 Da        Isoelectric Point: 4.8282

>NTDB_id=968049 MKY17_RS28015 WP_076368498.1 5794552..5795079(-) (ssbA) [Peribacillus sp. FSL P2-0133]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRGFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYGNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPFA
NDGKTIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=968049 MKY17_RS28015 WP_076368498.1 5794552..5795079(-) (ssbA) [Peribacillus sp. FSL P2-0133]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTGAACCGTGGTTTTACGAATCAGCAGGGTGAACGTGAAGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGTGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGAGGTCAAAGAAGTTATGGCAATAATAACGGAAATGACA
ACAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCGTTTGCA
AATGACGGTAAGACAATCGACATTTCAGATGACGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.101

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.566
  ssb Glaesserella parasuis strain SC1401

35.294

100

0.377
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

60.571

0.371

Multiple sequence alignment