Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACK2I7_RS08045 Genome accession   NZ_CP176632
Coordinates   1628079..1628669 (-) Length   196 a.a.
NCBI ID   WP_021002202.1    Uniprot ID   -
Organism   Streptococcus anginosus strain SFAD 40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1623079..1633669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2I7_RS08020 spx 1623420..1623818 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  ACK2I7_RS08025 recA 1623905..1625050 (-) 1146 WP_021002199.1 recombinase RecA Machinery gene
  ACK2I7_RS08030 cinA 1625095..1626366 (-) 1272 WP_021002200.1 competence/damage-inducible protein A Machinery gene
  ACK2I7_RS08035 - 1626967..1627387 (+) 421 Protein_1558 EamA family transporter -
  ACK2I7_RS08040 - 1627490..1628068 (-) 579 WP_021002201.1 DNA-3-methyladenine glycosylase I -
  ACK2I7_RS08045 ruvA 1628079..1628669 (-) 591 WP_021002202.1 Holliday junction branch migration protein RuvA Machinery gene
  ACK2I7_RS08050 - 1628831..1629340 (+) 510 WP_003026648.1 helix-turn-helix domain-containing protein -
  ACK2I7_RS08055 hexB 1629723..1631669 (-) 1947 WP_003026650.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACK2I7_RS08060 brsR 1631914..1632354 (+) 441 WP_411353963.1 LytTR family DNA-binding domain-containing protein Regulator
  ACK2I7_RS08065 - 1632351..1632809 (+) 459 WP_021002204.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21581.05 Da        Isoelectric Point: 6.4894

>NTDB_id=967914 ACK2I7_RS08045 WP_021002202.1 1628079..1628669(-) (ruvA) [Streptococcus anginosus strain SFAD 40]
MYEYFKGILSKITAKYIVVEVGQIGYILHVANPYAYSGQVNQEIQVFVHQVVREDAQLLYGFRTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGVAPKQVAVAATSDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTNDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=967914 ACK2I7_RS08045 WP_021002202.1 1628079..1628669(-) (ruvA) [Streptococcus anginosus strain SFAD 40]
ATGTACGAATATTTTAAAGGAATTTTAAGTAAAATCACAGCCAAATATATTGTAGTGGAGGTGGGGCAAATTGGCTATAT
CCTGCATGTGGCAAATCCCTATGCCTATTCAGGTCAGGTCAATCAGGAGATTCAAGTTTTTGTTCATCAGGTGGTCAGAG
AGGATGCCCAGCTCCTCTACGGTTTTCGCACAGAGGATGAAAAGCAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGACCTGTTTCTGCTCTTGCGATAATCGCTGCCGATGATAATGCCGGTTTGGTGCAGGCTATTGAGCAGAAAAACATCAC
TTATCTGACAAAATTTCCTAAAATCGGCAAAAAAACAGCCCAGCAGATGGTGCTGGACTTAGAAGGCAAGGTTGTGGCAA
CAGGTGTTGCTCCTAAGCAAGTTGCTGTTGCAGCTACTAGTGACAATCAAGAATTGGAAGAAGCCATGGAAGCCATGCTA
GCTCTGGGATACAAGGCGGCTGAACTCAAGAAAATTAAGAAATTCTTTGAAGGAACCAATGATACCGCGGAAAACTATAT
CAAATCTGCCCTCAAAATGCTGGTAAAATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(152-194)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

85.279

100

0.857
  ruvA Streptococcus pneumoniae D39

85.279

100

0.857
  ruvA Streptococcus pneumoniae TIGR4

85.279

100

0.857
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.488

100

0.423