Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NYE20_RS20410 Genome accession   NZ_CP150252
Coordinates   3863109..3863228 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus sp. FSL R5-0416     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3858109..3868228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE20_RS20385 (NYE20_20385) albG 3858273..3858974 (+) 702 WP_085185518.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  NYE20_RS20390 (NYE20_20390) - 3858980..3860356 (-) 1377 WP_161621153.1 YncE family protein -
  NYE20_RS20395 (NYE20_20395) - 3860395..3861750 (-) 1356 WP_015250986.1 YncE family protein -
  NYE20_RS20400 (NYE20_20400) - 3861747..3861977 (-) 231 Protein_3962 hypothetical protein -
  NYE20_RS20405 (NYE20_20405) rapF 3861980..3863125 (+) 1146 WP_032727072.1 response regulator aspartate phosphatase RapF Regulator
  NYE20_RS20410 (NYE20_20410) phrF 3863109..3863228 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  NYE20_RS20415 (NYE20_20415) - 3863481..3863960 (+) 480 WP_015714892.1 hypothetical protein -
  NYE20_RS20420 (NYE20_20420) - 3864109..3864897 (+) 789 WP_015714893.1 membrane protein -
  NYE20_RS20425 (NYE20_20425) - 3864884..3865558 (+) 675 WP_021480844.1 hypothetical protein -
  NYE20_RS20430 (NYE20_20430) - 3865568..3866365 (+) 798 WP_235701103.1 hypothetical protein -
  NYE20_RS20435 (NYE20_20435) - 3866368..3867015 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  NYE20_RS20440 (NYE20_20440) - 3867008..3867568 (+) 561 WP_015714897.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=967916 NYE20_RS20410 WP_009968329.1 3863109..3863228(+) (phrF) [Bacillus sp. FSL R5-0416]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=967916 NYE20_RS20410 WP_009968329.1 3863109..3863228(+) (phrF) [Bacillus sp. FSL R5-0416]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment