Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CTR2_RS27315 Genome accession   NZ_AP026738
Coordinates   5868036..5868584 (-) Length   182 a.a.
NCBI ID   WP_003064700.1    Uniprot ID   A0A5S4SNL5
Organism   Comamonas thiooxydans strain R2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5863036..5873584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTR2_RS27290 (CTR2_R53180) - 5863345..5863695 (+) 351 WP_034348032.1 phage holin family protein -
  CTR2_RS27295 (CTR2_R53190) - 5863654..5865315 (-) 1662 WP_140401090.1 M48 family metalloprotease -
  CTR2_RS27300 (CTR2_R53200) moaC 5865516..5865983 (+) 468 WP_087085610.1 cyclic pyranopterin monophosphate synthase MoaC -
  CTR2_RS27305 (CTR2_R53210) - 5866213..5866812 (-) 600 WP_087085609.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CTR2_RS27310 (CTR2_R53220) - 5867003..5867719 (-) 717 WP_087085608.1 FHA domain-containing protein -
  CTR2_RS27315 (CTR2_R53230) ssb 5868036..5868584 (-) 549 WP_003064700.1 single-stranded DNA-binding protein Machinery gene
  CTR2_RS27320 (CTR2_R53240) - 5868834..5870006 (-) 1173 WP_140401096.1 MFS transporter -
  CTR2_RS27325 (CTR2_R53250) uvrA 5870451..5873519 (+) 3069 WP_087085606.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20057.22 Da        Isoelectric Point: 5.9603

>NTDB_id=96786 CTR2_RS27315 WP_003064700.1 5868036..5868584(-) (ssb) [Comamonas thiooxydans strain R2]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAPRRQAPAPMQQRPAPAPMQQRPAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=96786 CTR2_RS27315 WP_003064700.1 5868036..5868584(-) (ssb) [Comamonas thiooxydans strain R2]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACGGACCGCTGGCGCGACAAGAACACCGGAGAAAACCGCGAAGCCACCGAATGGC
ACCGTGTGGTATTCAACGGCAAACTGGCCGAAATCGTGGGTCAGTACCTGCGCAAAGGCAGTCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGCGCCGACGCCATGCA
GATGCTGGGCAGCCGCCAGGGTGGTGGTCAGCAGCAAGGCGGCTACGGCAGCGATGATGGCTACGGCGAAAGCAGCTACG
AAGCACCCCGCCGTCAGGCTCCCGCACCCATGCAGCAGCGTCCCGCACCGGCACCCATGCAGCAGCGTCCTGCTCCTGCA
CCCATGGCTCCTCCCCCCCAGCGCGCAGCCTCGGGGTTTGACGACATGGATGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SNL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.886

100

0.571
  ssb Glaesserella parasuis strain SC1401

51.562

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.565

100

0.451

Multiple sequence alignment