NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	ACKZ7T_RS08695	Genome accession	NZ_CP176564
Coordinates	1764895..1765581 (-)	Length	228 a.a.
NCBI ID	WP_409481322.1	Uniprot ID	-
Organism	Staphylococcus aureus strain V0641
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1759895..1770581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKZ7T_RS08650 (ACKZ7T_08650)	rpmA	1760609..1760893 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
ACKZ7T_RS08655 (ACKZ7T_08655)	-	1760905..1761225 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
ACKZ7T_RS08660 (ACKZ7T_08660)	rplU	1761231..1761539 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
ACKZ7T_RS08665 (ACKZ7T_08665)	mreD	1761832..1762362 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
ACKZ7T_RS08670 (ACKZ7T_08670)	mreC	1762362..1763204 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
ACKZ7T_RS08675 (ACKZ7T_08675)	-	1763403..1763522 (-)	120	WP_000840603.1	hypothetical protein	-
ACKZ7T_RS08680 (ACKZ7T_08680)	-	1763596..1764069 (-)	474	WP_001236737.1	DUF4930 family protein	-
ACKZ7T_RS08685 (ACKZ7T_08685)	-	1764229..1764426 (+)	198	WP_000025835.1	hypothetical protein	-
ACKZ7T_RS08690 (ACKZ7T_08690)	-	1764543..1764827 (-)	285	WP_000171863.1	hypothetical protein	-
ACKZ7T_RS08695 (ACKZ7T_08695)	ysxA/radC	1764895..1765581 (-)	687	WP_409481322.1	RadC family protein	Machinery gene
ACKZ7T_RS08700 (ACKZ7T_08700)	-	1765578..1766285 (-)	708	WP_000261111.1	prepilin peptidase	-
ACKZ7T_RS08705 (ACKZ7T_08705)	-	1766547..1767818 (-)	1272	WP_409481323.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
ACKZ7T_RS08710 (ACKZ7T_08710)	-	1767831..1770461 (-)	2631	WP_409481324.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25285.16 Da Isoelectric Point: 6.7572

                                >NTDB_id=967530 ACKZ7T_RS08695 WP_409481322.1 1764895..1765581(-) (ysxA/radC) [Staphylococcus aureus strain V0641]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKTTQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=967530 ACKZ7T_RS08695 WP_409481322.1 1764895..1765581(-) (ysxA/radC) [Staphylococcus aureus strain V0641]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCGATT

ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAACAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATTGGTGATAATA

GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.232	98.246	0.513
radC	Streptococcus gordonii str. Challis substr. CH1	41.629	96.93	0.404
radC	Streptococcus pneumoniae TIGR4	41.589	93.86	0.39
radC	Streptococcus pneumoniae R6	41.121	93.86	0.386
radC	Streptococcus pneumoniae D39	41.121	93.86	0.386

Detailed information NTG0967530