Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKY95_RS33010 Genome accession   NZ_CP150242
Coordinates   7263278..7263763 (-) Length   161 a.a.
NCBI ID   WP_036611943.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL P4-0176     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7258278..7268763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY95_RS32985 (MKY95_32985) opp4B 7258497..7259459 (-) 963 WP_036611942.1 oligopeptide ABC transporter permease -
  MKY95_RS32990 (MKY95_32990) - 7259467..7260399 (-) 933 WP_017691436.1 ATP-binding cassette domain-containing protein -
  MKY95_RS32995 (MKY95_32995) - 7260414..7261403 (-) 990 WP_036612047.1 ABC transporter ATP-binding protein -
  MKY95_RS33000 (MKY95_33000) - 7262131..7262720 (-) 590 Protein_6458 M15 family metallopeptidase -
  MKY95_RS33005 (MKY95_33005) rpsR 7262949..7263221 (-) 273 WP_017691433.1 30S ribosomal protein S18 -
  MKY95_RS33010 (MKY95_33010) ssbA 7263278..7263763 (-) 486 WP_036611943.1 single-stranded DNA-binding protein Machinery gene
  MKY95_RS33015 (MKY95_33015) rpsF 7263812..7264105 (-) 294 WP_036611944.1 30S ribosomal protein S6 -
  MKY95_RS33020 (MKY95_33020) - 7264308..7264502 (+) 195 WP_036611947.1 YjzC family protein -
  MKY95_RS33030 (MKY95_33030) - 7265135..7265344 (-) 210 WP_036611950.1 DUF951 domain-containing protein -
  MKY95_RS33035 (MKY95_33035) - 7265334..7266164 (-) 831 WP_223200026.1 mechanosensitive ion channel family protein -
  MKY95_RS33040 (MKY95_33040) - 7266290..7266553 (-) 264 WP_017691427.1 DUF3343 domain-containing protein -
  MKY95_RS33045 (MKY95_33045) yyaC 7266671..7267276 (+) 606 WP_036611957.1 spore protease YyaC -
  MKY95_RS33050 (MKY95_33050) - 7267251..7267751 (-) 501 WP_036611960.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17833.66 Da        Isoelectric Point: 4.8369

>NTDB_id=967373 MKY95_RS33010 WP_036611943.1 7263278..7263763(-) (ssbA) [Paenibacillus sp. FSL P4-0176]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEKEADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESANRDNSGGGGGQPMREEPSYGGGGRANNNNNSRNNNQDPFSDDGKPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=967373 MKY95_RS33010 WP_036611943.1 7263278..7263763(-) (ssbA) [Paenibacillus sp. FSL P4-0176]
TTGTTGAACCGTGTCATTCTGATCGGACGGTTAACCCGGGATCCTGAGTTGCGTTACACTCCAGCAGGAGTGGCAGTTAC
GCAATTTACTTTGGCAGTGGACAGACCGTTTACAAGCCAAGGGGGAGAAAAGGAAGCCGATTTCATTCCGGTCGTAACCT
GGAGACAGCTTGCCGAGACCTGTGCGAACTACTTGCGCAAAGGACGCCTGGCTGCAGTCGAAGGACGCATTCAAGTACGG
AACTACGAGAATAACGAAGGAAAACGTGTATACGTGACCGAAGTCATTGCCGATAATGTCCGTTTCTTGGAGTCAGCTAA
CCGTGATAATAGCGGTGGCGGCGGTGGGCAACCAATGCGTGAAGAGCCTTCTTATGGAGGCGGCGGACGCGCGAACAATA
ACAATAATTCGCGTAACAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATTGATATATCGGATGATGATTTGCCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.528
  ssbA Streptococcus mutans UA159

39.13

100

0.391
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

69.565

0.379

Multiple sequence alignment