Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACKTSN_RS13885 Genome accession   NZ_CP176503
Coordinates   2942182..2943807 (-) Length   541 a.a.
NCBI ID   WP_409469420.1    Uniprot ID   -
Organism   Streptomyces sp. HC307     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2937182..2948807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSN_RS13860 (ACKTSN_13860) rpsB 2937353..2938240 (-) 888 WP_409469417.1 30S ribosomal protein S2 -
  ACKTSN_RS13865 (ACKTSN_13865) - 2938513..2939112 (+) 600 WP_409469418.1 peptidoglycan DD-metalloendopeptidase family protein -
  ACKTSN_RS13870 (ACKTSN_13870) - 2939259..2939816 (-) 558 WP_409474824.1 TetR/AcrR family transcriptional regulator -
  ACKTSN_RS13875 (ACKTSN_13875) whiG 2939911..2940753 (-) 843 WP_129801604.1 RNA polymerase sigma factor WhiG -
  ACKTSN_RS13880 (ACKTSN_13880) dprA 2941025..2942185 (-) 1161 WP_409469419.1 DNA-processing protein DprA -
  ACKTSN_RS13885 (ACKTSN_13885) comM 2942182..2943807 (-) 1626 WP_409469420.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACKTSN_RS13890 (ACKTSN_13890) - 2943809..2944210 (-) 402 WP_409469421.1 YraN family protein -
  ACKTSN_RS13895 (ACKTSN_13895) - 2944298..2944606 (-) 309 WP_003993268.1 DUF2469 domain-containing protein -
  ACKTSN_RS13900 (ACKTSN_13900) - 2944663..2945187 (-) 525 WP_409474825.1 NUDIX hydrolase -
  ACKTSN_RS13905 (ACKTSN_13905) lepB 2945222..2945995 (-) 774 WP_409469422.1 signal peptidase I -
  ACKTSN_RS13910 (ACKTSN_13910) lepB 2946087..2947073 (-) 987 WP_409469423.1 signal peptidase I -
  ACKTSN_RS13915 (ACKTSN_13915) lepB 2946961..2948052 (-) 1092 WP_409469424.1 signal peptidase I -
  ACKTSN_RS13920 (ACKTSN_13920) lepB 2948045..2948761 (-) 717 WP_409469425.1 signal peptidase I -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56300.43 Da        Isoelectric Point: 6.6845

>NTDB_id=967265 ACKTSN_RS13885 WP_409469420.1 2942182..2943807(-) (comM) [Streptomyces sp. HC307]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGGEWPQKKLTVGLSPASVPKAGSG
FDLAVACAVLGACERIDPRVLADIVMIGELGLDGRVRPVRGTLPAVLAAADAGYEQVVVPECAAAEASLVPGVSVLGVRS
LRQLIAVLADEPVPDEEPAEPGRPDPLLAGLRVPGTGAATGMHSSGAAQHDQDHDLADVVGQTSARTAVEVAAAGGHHLL
LSGPPGAGKTMLAERLPAVLPRLGREEALEVTAVHSVAGLLPPGKPMIDTAPYCAPHHSATMQALVGGGPGMARPGAVSL
SHRGVLFLDEAPEFSSHALDALRQPLESGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSQTDSLCECPPSAIRRYQAR
LSGPLLDRVDLRVEVDRVTRAQLADRGVRGESTATVADRVRAARERAAARFAGTPWRTNSEVPGRELRSRWHAATGAMDE
AERNLERGALTARGIDRVLRVAWSVADLVGHDRPDATDVALALQLRTGVPRGVPMAIGALT

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=967265 ACKTSN_RS13885 WP_409469420.1 2942182..2943807(-) (comM) [Streptomyces sp. HC307]
ATGGGCTTCGCACGTACGTGCTCCGTCGCCCTCGTCGGGGTGGAGGGCGTGGTCGTCGAGGTCCAGGCCGACCTCGAACC
GGGTGTCGCCGCGTTCACGCTGGTGGGACTGCCGGACAAGAGCCTGACGGAGAGCCGGGACCGGGTGCGGGCGGCGGTCG
TCAACTCCGGGGGTGAGTGGCCGCAGAAGAAGCTCACGGTCGGGCTCAGTCCGGCGTCGGTCCCGAAGGCGGGCAGTGGT
TTCGACCTGGCCGTCGCCTGCGCGGTGCTGGGCGCCTGCGAGCGGATCGATCCGCGGGTGCTCGCCGACATCGTGATGAT
CGGCGAGCTGGGCCTGGACGGACGGGTGCGGCCGGTGCGGGGCACCCTGCCGGCCGTGCTCGCCGCGGCGGACGCGGGCT
ATGAGCAGGTGGTCGTGCCGGAGTGCGCGGCAGCCGAGGCCTCCCTGGTGCCCGGAGTGTCCGTGCTGGGCGTGCGCAGT
CTGCGCCAGCTGATCGCCGTACTGGCGGACGAGCCCGTCCCCGACGAGGAACCGGCCGAACCGGGACGTCCCGACCCACT
GCTCGCCGGCCTGCGGGTTCCCGGCACCGGCGCGGCAACGGGCATGCACAGCTCCGGCGCCGCGCAGCACGACCAGGACC
ACGACCTCGCCGACGTCGTCGGACAGACCTCGGCTCGGACCGCCGTGGAGGTCGCCGCGGCCGGCGGACATCATCTCCTC
CTGTCGGGACCGCCCGGTGCCGGGAAGACGATGCTCGCGGAGCGGCTGCCCGCCGTCCTGCCCAGGCTCGGCCGCGAGGA
GGCGCTGGAGGTGACGGCGGTGCACTCCGTGGCGGGCCTGCTGCCCCCGGGCAAACCCATGATCGACACCGCTCCCTACT
GCGCCCCGCACCACTCGGCCACCATGCAGGCGCTGGTCGGCGGCGGCCCGGGGATGGCCCGCCCCGGCGCCGTGTCGCTG
TCCCATCGGGGGGTGCTCTTTCTCGACGAGGCGCCGGAGTTCAGCAGCCATGCGCTCGACGCCCTGCGACAACCCCTGGA
GTCGGGGCATGTCGTGATCGCCCGCAGTGCCGGGGTGGTGCGGTTCCCGGCGAGGTTCCTGATGGTGCTCGCCGCGAACC
CGTGCCCCTGCGGCCGCTTCTCGCAGACCGACAGCCTGTGCGAGTGCCCGCCCTCGGCGATCCGCCGCTACCAGGCCCGG
CTCTCGGGACCACTCCTCGACCGGGTCGACCTCAGAGTGGAAGTGGACCGCGTCACCCGCGCCCAGCTCGCCGACCGCGG
TGTGCGGGGTGAGTCCACGGCGACGGTCGCCGACCGTGTCCGGGCGGCGCGGGAGCGGGCCGCAGCACGCTTCGCCGGTA
CGCCCTGGCGGACGAACAGCGAGGTGCCCGGCCGGGAGCTGCGCAGCCGCTGGCACGCCGCGACCGGCGCGATGGACGAG
GCGGAACGCAATCTGGAGCGGGGCGCGCTGACGGCACGCGGAATCGACCGGGTGCTGCGGGTCGCCTGGAGCGTCGCCGA
CCTCGTGGGACACGACCGGCCCGACGCGACGGACGTCGCCCTGGCGCTGCAACTGCGTACGGGAGTGCCGCGCGGTGTGC
CGATGGCCATCGGGGCGCTGACATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

41.176

97.412

0.401
  comM Vibrio cholerae strain A1552

41.176

97.412

0.401
  comM Vibrio campbellii strain DS40M4

40.114

97.227

0.39
  comM Haemophilus influenzae Rd KW20

37.97

98.336

0.373
  comM Acinetobacter baylyi ADP1

39.335

94.455

0.372
  comM Glaesserella parasuis strain SC1401

37.17

97.967

0.364