Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKX55_RS22870 Genome accession   NZ_CP150214
Coordinates   4756869..4757387 (-) Length   172 a.a.
NCBI ID   WP_042528694.1    Uniprot ID   A0A0A1MBC4
Organism   Oceanobacillus sp. FSL W7-1281     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4751869..4762387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX55_RS22850 (MKX55_22850) - 4752493..4753425 (-) 933 WP_339235243.1 YybS family protein -
  MKX55_RS22855 (MKX55_22855) - 4754319..4754804 (+) 486 WP_339235245.1 DUF1189 family protein -
  MKX55_RS22860 (MKX55_22860) - 4754926..4756296 (+) 1371 WP_339181173.1 citrate:proton symporter -
  MKX55_RS22865 (MKX55_22865) rpsR 4756599..4756829 (-) 231 WP_042528696.1 30S ribosomal protein S18 -
  MKX55_RS22870 (MKX55_22870) ssbA 4756869..4757387 (-) 519 WP_042528694.1 single-stranded DNA-binding protein Machinery gene
  MKX55_RS22875 (MKX55_22875) rpsF 4757403..4757690 (-) 288 WP_042528692.1 30S ribosomal protein S6 -
  MKX55_RS22880 (MKX55_22880) ychF 4757895..4758995 (-) 1101 WP_339235247.1 redox-regulated ATPase YchF -
  MKX55_RS22885 (MKX55_22885) - 4759189..4759383 (-) 195 WP_339235249.1 DUF951 domain-containing protein -
  MKX55_RS22890 (MKX55_22890) - 4759495..4760403 (-) 909 WP_339235253.1 mechanosensitive ion channel family protein -
  MKX55_RS22895 (MKX55_22895) - 4760635..4761654 (-) 1020 WP_339235256.1 hypothetical protein -
  MKX55_RS22900 (MKX55_22900) yyaC 4761733..4762332 (+) 600 WP_339235258.1 spore protease YyaC -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19383.06 Da        Isoelectric Point: 4.5909

>NTDB_id=966566 MKX55_RS22870 WP_042528694.1 4756869..4757387(-) (ssbA) [Oceanobacillus sp. FSL W7-1281]
MLNRVVLVGRLTRDPDLRYTPSGVAVANFNIAVNRPFSNQQGDREADFINCVVWRRPAENLANYMKKGSLIGVDGRVQTR
NFEGQDGKRVYVTEIVADSVQFLETKGSQGGGQFQSDGYQNNQNNQNQYQQNPFSSNQNQGFNQNQNQNTSQEDPFKNNG
EPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=966566 MKX55_RS22870 WP_042528694.1 4756869..4757387(-) (ssbA) [Oceanobacillus sp. FSL W7-1281]
ATGTTAAATCGTGTCGTATTAGTTGGCAGATTAACGAGGGATCCTGATTTACGCTATACACCAAGCGGTGTGGCAGTAGC
TAATTTTAATATTGCTGTGAACAGACCTTTTTCAAATCAACAGGGAGATCGCGAAGCAGATTTTATTAACTGTGTCGTTT
GGCGCAGACCTGCGGAGAACCTGGCGAATTATATGAAAAAAGGAAGTTTGATTGGTGTAGATGGCCGTGTACAGACACGT
AATTTTGAAGGCCAGGATGGCAAACGGGTTTATGTAACAGAGATTGTTGCAGATAGTGTCCAATTCTTAGAGACGAAAGG
TTCCCAAGGGGGCGGACAGTTTCAATCGGATGGATACCAGAACAACCAAAATAATCAGAACCAATATCAGCAAAATCCAT
TTTCATCAAATCAAAATCAAGGATTTAATCAAAACCAAAATCAAAATACAAGTCAGGAAGATCCATTTAAAAACAATGGA
GAACCAATTGACATATCAGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1MBC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.286

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

60.345

100

0.61
  ssb Glaesserella parasuis strain SC1401

35.556

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

61.628

0.36

Multiple sequence alignment