Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NYE61_RS13885 Genome accession   NZ_CP150211
Coordinates   2730669..2731181 (+) Length   170 a.a.
NCBI ID   WP_095314023.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL W7-1304     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2725669..2736181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE61_RS13855 (NYE61_13855) yyaC 2725931..2726554 (-) 624 WP_095314012.1 spore protease YyaC -
  NYE61_RS13860 (NYE61_13860) - 2726646..2727668 (+) 1023 WP_095314014.1 hypothetical protein -
  NYE61_RS13865 (NYE61_13865) - 2727688..2728587 (+) 900 WP_095314015.1 mechanosensitive ion channel family protein -
  NYE61_RS13870 (NYE61_13870) - 2728627..2728821 (+) 195 WP_303447147.1 DUF951 domain-containing protein -
  NYE61_RS13875 (NYE61_13875) ychF 2729083..2730183 (+) 1101 WP_095314020.1 redox-regulated ATPase YchF -
  NYE61_RS13880 (NYE61_13880) rpsF 2730366..2730653 (+) 288 WP_095314021.1 30S ribosomal protein S6 -
  NYE61_RS13885 (NYE61_13885) ssbA 2730669..2731181 (+) 513 WP_095314023.1 single-stranded DNA-binding protein Machinery gene
  NYE61_RS13890 (NYE61_13890) rpsR 2731217..2731447 (+) 231 WP_095314025.1 30S ribosomal protein S18 -
  NYE61_RS13895 (NYE61_13895) - 2731618..2732325 (-) 708 WP_303447146.1 DUF4367 domain-containing protein -
  NYE61_RS13900 (NYE61_13900) - 2732309..2732848 (-) 540 WP_303447145.1 RNA polymerase sigma factor -
  NYE61_RS13905 (NYE61_13905) - 2733010..2733597 (-) 588 WP_095314247.1 hypothetical protein -
  NYE61_RS13910 (NYE61_13910) - 2733676..2734146 (-) 471 WP_303447143.1 peptidoglycan-binding domain-containing protein -
  NYE61_RS13915 (NYE61_13915) - 2734447..2734908 (-) 462 WP_339315743.1 DUF1189 family protein -
  NYE61_RS13920 (NYE61_13920) - 2735233..2736177 (+) 945 WP_095314242.1 YybS family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19202.96 Da        Isoelectric Point: 4.7093

>NTDB_id=966476 NYE61_RS13885 WP_095314023.1 2730669..2731181(+) (ssbA) [Oceanobacillus sp. FSL W7-1304]
MLNRVVLVGRLTRDPDLRYTPNGVAVANFTIAVNRPFSNQQGNREADFINCVVWRRPAENLANFMKKGSMIGVDGRVQTR
SFEGQDGKTVYVTEIVADSVQFLESKGSSSGGQDSQGYQQNRNQNQFQNQNQYQPNQNQNQFQPNNNQPQDDPFKNNGEP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=966476 NYE61_RS13885 WP_095314023.1 2730669..2731181(+) (ssbA) [Oceanobacillus sp. FSL W7-1304]
ATGTTAAATCGTGTCGTACTAGTAGGCAGGTTAACGAGGGATCCTGATTTACGTTATACACCAAATGGCGTGGCAGTAGC
CAACTTTACGATTGCTGTTAATCGTCCCTTTTCTAACCAACAAGGAAATAGAGAAGCAGATTTTATTAACTGTGTCGTTT
GGCGTAGACCAGCAGAAAACCTGGCAAACTTCATGAAAAAAGGTAGTATGATCGGTGTAGATGGTCGAGTTCAAACACGT
TCATTTGAAGGACAAGATGGAAAAACCGTATATGTGACTGAAATTGTTGCAGATAGTGTACAATTTTTGGAATCAAAAGG
TTCTTCTTCTGGCGGACAGGATTCGCAAGGTTACCAGCAAAATAGAAATCAGAACCAATTTCAAAATCAGAATCAATACC
AACCGAATCAAAACCAAAATCAGTTTCAACCAAATAATAACCAACCACAAGACGATCCATTTAAGAATAATGGAGAGCCT
ATAGATATATCAGACGATGATTTACCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.272

100

0.624
  ssb Latilactobacillus sakei subsp. sakei 23K

58.382

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

62.353

0.365
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.365

Multiple sequence alignment