Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACKN8R_RS03160 Genome accession   NZ_CP176031
Coordinates   664481..664954 (-) Length   157 a.a.
NCBI ID   WP_042771704.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain L2171     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 659481..669954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKN8R_RS03135 (ACKN8R_03135) - 659757..660560 (-) 804 WP_054395320.1 hypothetical protein -
  ACKN8R_RS03140 (ACKN8R_03140) - 660931..661587 (+) 657 WP_042771709.1 inovirus Gp2 family protein -
  ACKN8R_RS03145 (ACKN8R_03145) - 661954..663117 (-) 1164 WP_042771707.1 hypothetical protein -
  ACKN8R_RS03150 (ACKN8R_03150) - 663114..663938 (-) 825 WP_042771706.1 YafY family protein -
  ACKN8R_RS03155 (ACKN8R_03155) - 664053..664484 (-) 432 WP_024703421.1 DUF2787 family protein -
  ACKN8R_RS03160 (ACKN8R_03160) radC 664481..664954 (-) 474 WP_042771704.1 RadC family protein Machinery gene
  ACKN8R_RS03165 (ACKN8R_03165) - 665125..665274 (+) 150 WP_023624903.1 AlpA family phage regulatory protein -
  ACKN8R_RS03170 (ACKN8R_03170) - 665434..665658 (+) 225 WP_024703419.1 hypothetical protein -
  ACKN8R_RS03175 (ACKN8R_03175) hslU 666074..667405 (-) 1332 WP_005489452.1 HslU--HslV peptidase ATPase subunit -
  ACKN8R_RS03180 (ACKN8R_03180) hslV 667429..667980 (-) 552 WP_005489705.1 ATP-dependent protease subunit HslV -
  ACKN8R_RS03185 (ACKN8R_03185) ftsN 668145..668690 (-) 546 WP_005481405.1 cell division protein FtsN -
  ACKN8R_RS03190 (ACKN8R_03190) cytR 668867..669913 (-) 1047 WP_254894148.1 DNA-binding transcriptional regulator CytR Regulator

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17646.10 Da        Isoelectric Point: 7.2351

>NTDB_id=966476 ACKN8R_RS03160 WP_042771704.1 664481..664954(-) (radC) [Vibrio parahaemolyticus strain L2171]
MSSNHLHYQKQKKHQENEILEHAAEILANRYVRGNALCNPEATKEYVRFKLASSEHEVFALLLLDNQHRVIEFKSLFKGT
IDSASVYPREVIKSVLEVNAAAVILAHNHPSGDPSPSQADRRITRKLIDALALVDVRVLDHIVVGESSVSFAEKGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=966476 ACKN8R_RS03160 WP_042771704.1 664481..664954(-) (radC) [Vibrio parahaemolyticus strain L2171]
ATGTCGAGCAATCACCTTCACTACCAAAAACAAAAGAAACATCAAGAAAATGAAATCCTAGAGCATGCTGCTGAAATCCT
AGCTAACCGCTACGTTCGAGGTAATGCCCTTTGTAACCCTGAAGCAACCAAAGAGTATGTCCGATTCAAACTAGCCAGCT
CGGAGCACGAGGTTTTCGCTCTGCTATTACTTGATAACCAACACCGTGTCATCGAGTTTAAATCACTCTTTAAAGGCACC
ATTGACTCCGCCAGCGTCTATCCGCGCGAGGTCATCAAAAGCGTTTTGGAAGTAAATGCTGCGGCGGTCATTCTGGCGCA
TAACCACCCTTCTGGTGACCCTTCCCCATCTCAAGCGGATAGGCGTATCACACGCAAGCTTATCGACGCTTTAGCGTTAG
TGGATGTCAGGGTGCTTGACCATATCGTTGTAGGAGAAAGTAGTGTCTCGTTTGCAGAAAAGGGGTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.905

87.261

0.427

Multiple sequence alignment