Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   ACKEGZ_RS07665 Genome accession   NZ_CP175957
Coordinates   1646877..1647899 (-) Length   340 a.a.
NCBI ID   WP_154469136.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RAf490     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1641877..1652899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKEGZ_RS07640 (ACKEGZ_07640) - 1642156..1642566 (+) 411 WP_154469134.1 VanZ family protein -
  ACKEGZ_RS07645 (ACKEGZ_07645) uvrC 1642556..1644346 (-) 1791 WP_185148441.1 excinuclease ABC subunit UvrC Machinery gene
  ACKEGZ_RS07650 (ACKEGZ_07650) - 1644366..1645355 (-) 990 WP_038693536.1 cation diffusion facilitator family transporter -
  ACKEGZ_RS07655 (ACKEGZ_07655) coaE 1645368..1645958 (-) 591 WP_004916520.1 dephospho-CoA kinase -
  ACKEGZ_RS07660 (ACKEGZ_07660) - 1645974..1646840 (-) 867 WP_038693534.1 MBL fold metallo-hydrolase -
  ACKEGZ_RS07665 (ACKEGZ_07665) ruvB 1646877..1647899 (-) 1023 WP_154469136.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACKEGZ_RS07670 (ACKEGZ_07670) - 1648062..1648568 (-) 507 WP_004916526.1 ferritin -
  ACKEGZ_RS07675 (ACKEGZ_07675) - 1648647..1649159 (-) 513 WP_154469137.1 NUDIX domain-containing protein -
  ACKEGZ_RS07680 (ACKEGZ_07680) xerD 1649164..1650075 (-) 912 WP_079207473.1 site-specific tyrosine recombinase XerD -
  ACKEGZ_RS07685 (ACKEGZ_07685) - 1650076..1650507 (-) 432 WP_004916535.1 dCMP deaminase family protein -
  ACKEGZ_RS07690 (ACKEGZ_07690) - 1650533..1651297 (-) 765 WP_154469138.1 enoyl-CoA hydratase/isomerase family protein -
  ACKEGZ_RS07695 (ACKEGZ_07695) - 1651309..1652460 (-) 1152 WP_229578710.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 38030.70 Da        Isoelectric Point: 5.1930

>NTDB_id=966439 ACKEGZ_RS07665 WP_154469136.1 1646877..1647899(-) (ruvB) [Riemerella anatipestifer strain RAf490]
MPDFLHPDKENYSAEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELG
VGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETGPNARSVQINLNPFTLVGA
TTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGVPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNG
EIEIKITKFALDSLNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREV
TDKAYRHLNISRAKNMGELF

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=966439 ACKEGZ_RS07665 WP_154469136.1 1646877..1647899(-) (ruvB) [Riemerella anatipestifer strain RAf490]
ATGCCAGACTTCTTACATCCAGATAAAGAAAATTATTCAGCCGAAGAGCTTTTATTAGAAGAGCAAATACGCCCTCAATC
ATTCAAAGATTTTGCTGGGCAAAGGCGTACTTTGGATAATTTAGAAGTCTTTGTAGCGGCTGCCAAAAAACGAGGTTCTG
CACTAGACCACACACTTTTACATGGTCCTCCAGGGTTAGGGAAAACCACTCTAGCCCACATTATTGCTAATGAACTTGGT
GTGGGTTTTAAAGTAACCTCTGGTCCTGTCTTAGACAAACCCGGAAGTTTAGCTGGACTTCTTACCAATTTAGAAGAAAA
CGATGTTCTTTTCATAGACGAAATACACCGTTTATCTCCCGTAGTAGAAGAGTACCTCTATTCCGCTATGGAAGATTACA
AGATAGATATTATGCTAGAAACAGGTCCTAATGCCCGTTCAGTACAAATCAATCTTAATCCGTTTACTTTAGTTGGAGCC
ACTACAAGAAGTGGTATGCTTACCAAACCAATGCTAGCGAGATTTGGGATACAATCTAGATTAGAGTACTACACAGTAGA
ACTTTTAGGTATGATTATCGAAAGAAGTGCTAGAGTGCTTGGCGTTCCTATTTATGAAGATGCTGCACTAGAGATAGCTA
GAAGAAGCCGAGGCACTCCTAGAATTGCGAATGCTCTACTTCGCCGTGTGCGAGATTTTGCAGAAATAAAAGGCAATGGC
GAGATAGAAATAAAGATAACCAAATTCGCACTAGATTCTCTCAATGTAGATGAGTTTGGGCTTGATGATATGGACAACAA
AATTATGAGGGTGATGATAGAAAACTTCAAAGGTAAACCCGTGGGAATTTCCGCATTAGCCACTTCCATCGGAGAAAATC
CAGAGACTTTGGAAGAAGTTTATGAGCCTTTTTTAATTCAGGAAGGATTTATCATCAGAACGCCAAGAGGAAGAGAAGTT
ACCGATAAGGCTTACCGACACCTCAATATCAGTAGAGCTAAAAATATGGGAGAGCTTTTCTAG

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(258-329)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

57.143

92.647

0.529
  ruvB Streptococcus pneumoniae R6

57.143

92.647

0.529
  ruvB Streptococcus pneumoniae D39

57.143

92.647

0.529
  ruvB Bacillus subtilis subsp. subtilis str. 168

56.508

92.647

0.524
  ruvB Synechocystis sp. PCC 6803

47.447

97.941

0.465
  ruvB Helicobacter pylori 26695

47.937

92.647

0.444