Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | NST10_RS13700 | Genome accession | NZ_CP150198 |
| Coordinates | 2789949..2790419 (+) | Length | 156 a.a. |
| NCBI ID | WP_047214707.1 | Uniprot ID | - |
| Organism | Staphylococcus sp. FSL W8-0305 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2753098..2796375 | 2789949..2790419 | within | 0 |
Gene organization within MGE regions
Location: 2753098..2796375
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NST10_RS13440 (NST10_13440) | groES | 2753098..2753382 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| NST10_RS13445 (NST10_13445) | groL | 2753458..2755074 (+) | 1617 | WP_000240651.1 | chaperonin GroEL | - |
| NST10_RS13450 (NST10_13450) | - | 2755143..2756315 (-) | 1173 | WP_000179348.1 | tyrosine-type recombinase/integrase | - |
| NST10_RS13455 (NST10_13455) | - | 2756316..2757086 (-) | 771 | WP_000589126.1 | helix-turn-helix domain-containing protein | - |
| NST10_RS13460 (NST10_13460) | - | 2757258..2757476 (+) | 219 | WP_000989513.1 | helix-turn-helix transcriptional regulator | - |
| NST10_RS13465 (NST10_13465) | - | 2757480..2757797 (+) | 318 | WP_000481969.1 | helix-turn-helix domain-containing protein | - |
| NST10_RS13470 (NST10_13470) | - | 2757794..2757940 (+) | 147 | WP_000784885.1 | hypothetical protein | - |
| NST10_RS13475 (NST10_13475) | - | 2757933..2758145 (+) | 213 | WP_001058497.1 | hypothetical protein | - |
| NST10_RS13480 (NST10_13480) | - | 2758147..2758506 (+) | 360 | WP_136624639.1 | pathogenicity island protein | - |
| NST10_RS13485 (NST10_13485) | - | 2758507..2758821 (+) | 315 | WP_063650259.1 | DUF1474 family protein | - |
| NST10_RS13490 (NST10_13490) | - | 2758892..2761144 (+) | 2253 | WP_339210384.1 | phage/plasmid primase, P4 family | - |
| NST10_RS13495 (NST10_13495) | - | 2761415..2761759 (+) | 345 | WP_000567972.1 | hypothetical protein | - |
| NST10_RS13500 (NST10_13500) | - | 2761761..2762402 (+) | 642 | WP_136624638.1 | pathogenicity island protein | - |
| NST10_RS13505 (NST10_13505) | - | 2762938..2763279 (+) | 342 | WP_023604825.1 | hypothetical protein | - |
| NST10_RS13510 (NST10_13510) | - | 2763291..2763869 (+) | 579 | WP_000846277.1 | hypothetical protein | - |
| NST10_RS13515 (NST10_13515) | - | 2763887..2764105 (+) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| NST10_RS13520 (NST10_13520) | - | 2764156..2764683 (+) | 528 | WP_023604826.1 | spore coat protein | - |
| NST10_RS13525 (NST10_13525) | - | 2764815..2765027 (+) | 213 | WP_025174984.1 | hypothetical protein | - |
| NST10_RS13530 (NST10_13530) | - | 2765024..2765593 (+) | 570 | WP_339210388.1 | terminase small subunit | - |
| NST10_RS13535 (NST10_13535) | - | 2766022..2766540 (+) | 519 | WP_000624990.1 | hypothetical protein | - |
| NST10_RS13540 (NST10_13540) | - | 2766537..2766965 (+) | 429 | WP_000591858.1 | hypothetical protein | - |
| NST10_RS13545 (NST10_13545) | - | 2766952..2767731 (+) | 780 | WP_000705255.1 | hypothetical protein | - |
| NST10_RS13550 (NST10_13550) | - | 2767968..2768195 (+) | 228 | WP_061642086.1 | hypothetical protein | - |
| NST10_RS13555 (NST10_13555) | - | 2768267..2768365 (+) | 99 | Protein_2629 | hypothetical protein | - |
| NST10_RS13560 (NST10_13560) | - | 2768669..2768944 (+) | 276 | Protein_2630 | hypothetical protein | - |
| NST10_RS13565 (NST10_13565) | - | 2769050..2769985 (-) | 936 | WP_061642085.1 | TDT family transporter | - |
| NST10_RS13570 (NST10_13570) | - | 2771105..2771284 (+) | 180 | WP_000201397.1 | hypothetical protein | - |
| NST10_RS13575 (NST10_13575) | - | 2771281..2771577 (+) | 297 | WP_001573769.1 | hypothetical protein | - |
| NST10_RS13580 (NST10_13580) | - | 2771567..2771908 (+) | 342 | WP_001573771.1 | hypothetical protein | - |
| NST10_RS13585 (NST10_13585) | - | 2772486..2773793 (-) | 1308 | WP_001045073.1 | TrkH family potassium uptake protein | - |
| NST10_RS13590 (NST10_13590) | - | 2774232..2775454 (-) | 1223 | Protein_2636 | ArgE/DapE family deacylase | - |
| NST10_RS13595 (NST10_13595) | - | 2775886..2776941 (+) | 1056 | WP_000791398.1 | leukocidin family pore-forming toxin | - |
| NST10_RS13600 (NST10_13600) | - | 2776963..2777982 (+) | 1020 | WP_000595617.1 | leukocidin/hemolysin toxin family protein | - |
| NST10_RS13605 (NST10_13605) | sph | 2778239..2779069 (-) | 831 | Protein_2639 | sphingomyelin phosphodiesterase | - |
| NST10_RS13610 (NST10_13610) | - | 2779120..2780157 (-) | 1038 | WP_061651379.1 | site-specific integrase | - |
| NST10_RS13615 (NST10_13615) | - | 2780348..2781061 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| NST10_RS13620 (NST10_13620) | - | 2781140..2781322 (-) | 183 | WP_000705243.1 | hypothetical protein | - |
| NST10_RS13625 (NST10_13625) | - | 2781478..2782176 (-) | 699 | WP_000837517.1 | potassium channel family protein | - |
| NST10_RS13630 (NST10_13630) | - | 2782358..2782990 (-) | 633 | WP_031763806.1 | XRE family transcriptional regulator | - |
| NST10_RS13635 (NST10_13635) | - | 2783144..2783371 (+) | 228 | WP_000192116.1 | helix-turn-helix transcriptional regulator | - |
| NST10_RS13640 (NST10_13640) | - | 2783394..2784182 (+) | 789 | WP_031763800.1 | phage antirepressor KilAC domain-containing protein | - |
| NST10_RS13645 (NST10_13645) | - | 2784199..2784393 (+) | 195 | WP_001566738.1 | hypothetical protein | - |
| NST10_RS13650 (NST10_13650) | - | 2784388..2784744 (-) | 357 | WP_000768245.1 | DUF2513 domain-containing protein | - |
| NST10_RS13655 (NST10_13655) | - | 2784794..2784985 (+) | 192 | WP_000389905.1 | hypothetical protein | - |
| NST10_RS13660 (NST10_13660) | - | 2784987..2785214 (-) | 228 | WP_000801108.1 | hypothetical protein | - |
| NST10_RS13665 (NST10_13665) | - | 2785273..2785593 (+) | 321 | WP_001120935.1 | DUF771 domain-containing protein | - |
| NST10_RS13670 (NST10_13670) | - | 2785590..2785751 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| NST10_RS13675 (NST10_13675) | - | 2785844..2786104 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| NST10_RS13680 (NST10_13680) | - | 2786113..2786376 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| NST10_RS13685 (NST10_13685) | - | 2786373..2788328 (+) | 1956 | WP_047214705.1 | AAA family ATPase | - |
| NST10_RS13690 (NST10_13690) | - | 2788330..2789250 (+) | 921 | WP_000138473.1 | recombinase RecT | - |
| NST10_RS13695 (NST10_13695) | - | 2789331..2789948 (+) | 618 | WP_225969699.1 | MBL fold metallo-hydrolase | - |
| NST10_RS13700 (NST10_13700) | ssbA | 2789949..2790419 (+) | 471 | WP_047214707.1 | single-stranded DNA-binding protein | Machinery gene |
| NST10_RS13705 (NST10_13705) | - | 2790449..2791333 (+) | 885 | WP_339210402.1 | DnaD domain protein | - |
| NST10_RS13710 (NST10_13710) | - | 2791340..2791558 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| NST10_RS13715 (NST10_13715) | - | 2791567..2791971 (+) | 405 | WP_001662398.1 | RusA family crossover junction endodeoxyribonuclease | - |
| NST10_RS13720 (NST10_13720) | - | 2791984..2792355 (+) | 372 | WP_064271353.1 | SA1788 family PVL leukocidin-associated protein | - |
| NST10_RS13725 (NST10_13725) | - | 2792356..2792604 (+) | 249 | WP_031793512.1 | phi PVL orf 51-like protein | - |
| NST10_RS13730 (NST10_13730) | - | 2792645..2792896 (+) | 252 | WP_001065074.1 | DUF1024 family protein | - |
| NST10_RS13735 (NST10_13735) | - | 2792886..2793068 (+) | 183 | WP_000028425.1 | hypothetical protein | - |
| NST10_RS13740 (NST10_13740) | - | 2793061..2793597 (+) | 537 | WP_000185703.1 | dUTPase | - |
| NST10_RS13745 (NST10_13745) | - | 2793634..2793879 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| NST10_RS13750 (NST10_13750) | - | 2793876..2794064 (+) | 189 | WP_000195782.1 | DUF1381 domain-containing protein | - |
| NST10_RS13755 (NST10_13755) | - | 2794039..2794239 (+) | 201 | WP_001125015.1 | hypothetical protein | - |
| NST10_RS13760 (NST10_13760) | - | 2794242..2794391 (+) | 150 | WP_339210412.1 | transcriptional regulator | - |
| NST10_RS13765 (NST10_13765) | - | 2794550..2795200 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| NST10_RS13770 (NST10_13770) | - | 2795200..2795400 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| NST10_RS13775 (NST10_13775) | - | 2795428..2795844 (+) | 417 | WP_064271351.1 | transcriptional regulator | - |
| NST10_RS13780 (NST10_13780) | - | 2796076..2796375 (+) | 300 | WP_000988330.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17579.36 Da Isoelectric Point: 4.9327
>NTDB_id=966047 NST10_RS13700 WP_047214707.1 2789949..2790419(+) (ssbA) [Staphylococcus sp. FSL W8-0305]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVAEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVAEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=966047 NST10_RS13700 WP_047214707.1 2789949..2790419(+) (ssbA) [Staphylococcus sp. FSL W8-0305]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTGCTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTGCTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60.452 |
100 |
0.686 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
67.949 |
0.391 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |