Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   AABJ90_RS06955 Genome accession   NZ_AP028964
Coordinates   1372006..1372701 (+) Length   231 a.a.
NCBI ID   WP_015251546.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1367006..1377701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS06935 (BsubNA05_13360) folC 1367937..1369229 (+) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AABJ90_RS06940 (BsubNA05_13370) comC 1369369..1370115 (+) 747 WP_072592551.1 A24 family peptidase Machinery gene
  AABJ90_RS06945 (BsubNA05_13380) spoIIB 1370249..1371247 (+) 999 WP_015251545.1 stage II sporulation protein SpoIIB -
  AABJ90_RS06950 (BsubNA05_13390) maf 1371400..1371969 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  AABJ90_RS06955 (BsubNA05_13400) ysxA/radC 1372006..1372701 (+) 696 WP_015251546.1 DNA repair protein RadC Machinery gene
  AABJ90_RS06960 (BsubNA05_13410) mreB 1372793..1373806 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AABJ90_RS06965 (BsubNA05_13420) mreC 1373837..1374709 (+) 873 WP_003222609.1 rod shape-determining protein MreC -
  AABJ90_RS06970 (BsubNA05_13430) mreD 1374706..1375224 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  AABJ90_RS06975 (BsubNA05_13440) minC 1375277..1375957 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  AABJ90_RS06980 (BsubNA05_13450) minD 1375959..1376765 (+) 807 WP_014664846.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26165.52 Da        Isoelectric Point: 8.3195

>NTDB_id=96603 AABJ90_RS06955 WP_015251546.1 1372006..1372701(+) (ysxA/radC) [Bacillus subtilis strain NA05 = NBRC 116153]
MVIRDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=96603 AABJ90_RS06955 WP_015251546.1 1372006..1372701(+) (ysxA/radC) [Bacillus subtilis strain NA05 = NBRC 116153]
TTGGTCATACGCGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTCGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment