Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NSQ18_RS00405 Genome accession   NZ_CP150191
Coordinates   77149..78867 (-) Length   572 a.a.
NCBI ID   WP_096550976.1    Uniprot ID   -
Organism   Ureibacillus sp. FSL K6-0786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 72149..83867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ18_RS00385 (NSQ18_00385) - 72946..73206 (+) 261 WP_016837762.1 DUF2627 domain-containing protein -
  NSQ18_RS00390 (NSQ18_00390) - 73263..74828 (-) 1566 WP_016837761.1 FapA family protein -
  NSQ18_RS00395 (NSQ18_00395) spo0A 74991..75782 (-) 792 WP_016837760.1 sporulation transcription factor Spo0A -
  NSQ18_RS00400 (NSQ18_00400) - 76047..77003 (-) 957 WP_168412230.1 SpoIVB peptidase S55 domain-containing protein -
  NSQ18_RS00405 (NSQ18_00405) recN 77149..78867 (-) 1719 WP_096550976.1 DNA repair protein RecN Machinery gene
  NSQ18_RS00410 (NSQ18_00410) argR 78883..79332 (-) 450 WP_016837756.1 transcriptional regulator ArgR -
  NSQ18_RS00415 (NSQ18_00415) - 79440..80258 (-) 819 WP_016837755.1 TlyA family RNA methyltransferase -
  NSQ18_RS00420 (NSQ18_00420) dxs 80255..82156 (-) 1902 WP_339288562.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NSQ18_RS00425 (NSQ18_00425) - 82249..83133 (-) 885 WP_016837753.1 polyprenyl synthetase family protein -
  NSQ18_RS00430 (NSQ18_00430) - 83138..83365 (-) 228 WP_016837752.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 65361.32 Da        Isoelectric Point: 4.8708

>NTDB_id=965644 NSQ18_RS00405 WP_096550976.1 77149..78867(-) (recN) [Ureibacillus sp. FSL K6-0786]
MLKELNIRNFAIIDELTVYFNDGLTVLTGETGAGKSIIIDAVHLLAGGRASQEFVRHGAKKAELTGLFFVSDNHPVFEKL
SDAGIDHEEGTIILRRDINENGKSVCRVNGKLVTLSILRDIGSTLVDIHGQHESQELMDEKCHIDLLDQFAEKQIQPIKD
KYHRLYHEYRLLKKEVDAINIDEQQTAQRIDLYQFQIQELEDAKLSEKEEEALLEERKRLQNFHKIYERAIHAYDAISGE
LKGLDCIGEAMSALEDIVSLDEQFHDSFEAVSSSFYALQDASYQIKNIIDELEFDPERLNEIESRLAQYQMMKRKYGSTV
KEIITYYEKIKEELNTLLNRDEAIQQKEQDLRKMESELDQLCDELTKVRKKCAGILSEAIMNELRDLHMEKAKFIVQFER
LNNFDINGKDYISFYISTNVGEPPKSLPKIASGGELSRIMLALKTIFSSKSQITSIIFDEVDTGVSGRVAQAIAEKIANI
SFNSQVLCISHLPQVAAMADQHYLISKQVEQNRTFTTVQVIENDTRVEEISRMMSGTEITELTLQHARELLQLALIKKNE
IKEQLKSSTSMQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=965644 NSQ18_RS00405 WP_096550976.1 77149..78867(-) (recN) [Ureibacillus sp. FSL K6-0786]
TTGCTGAAAGAGCTGAATATACGTAATTTCGCCATAATCGACGAATTAACCGTTTACTTTAATGATGGATTAACCGTTCT
AACAGGTGAAACAGGAGCCGGAAAGTCCATCATTATCGATGCTGTTCATTTGTTAGCTGGTGGACGAGCAAGTCAAGAAT
TTGTGCGACACGGTGCAAAAAAAGCGGAATTAACAGGACTGTTTTTCGTTTCTGACAATCATCCTGTTTTTGAAAAATTA
TCTGATGCCGGTATAGACCATGAAGAAGGTACCATTATATTACGGAGAGATATTAATGAAAACGGAAAAAGCGTATGTCG
AGTTAATGGAAAACTTGTTACATTATCAATTTTACGTGATATCGGCTCCACGTTAGTGGATATTCATGGACAACATGAAA
GCCAAGAATTAATGGATGAGAAGTGCCATATCGATTTACTTGATCAATTTGCGGAAAAACAAATCCAGCCAATCAAAGAC
AAATATCATCGCCTCTATCATGAATATCGTCTATTAAAAAAAGAAGTCGATGCCATCAATATCGATGAACAACAGACAGC
TCAACGTATTGATTTGTATCAATTCCAAATTCAAGAGCTAGAAGATGCAAAATTATCAGAAAAAGAAGAAGAGGCTTTAC
TTGAAGAACGGAAACGATTGCAAAATTTTCATAAGATTTATGAACGAGCCATTCATGCATACGATGCAATTTCTGGAGAA
TTAAAAGGACTAGATTGTATTGGAGAAGCGATGAGCGCTTTGGAAGATATCGTTTCATTAGATGAGCAATTTCATGATTC
CTTTGAAGCTGTATCATCTTCATTCTATGCGTTGCAAGATGCTTCATATCAAATCAAAAATATCATTGATGAACTTGAAT
TTGACCCTGAACGATTAAATGAAATAGAATCACGGCTTGCACAATATCAAATGATGAAACGAAAATATGGAAGTACCGTA
AAAGAGATTATTACATATTATGAAAAAATTAAAGAAGAACTAAACACACTATTAAATCGAGATGAAGCTATTCAACAAAA
AGAACAAGATTTAAGAAAAATGGAATCTGAATTAGACCAATTGTGTGATGAATTAACGAAAGTTCGAAAAAAATGTGCAG
GTATATTGAGTGAAGCCATAATGAATGAGCTTCGTGATTTACATATGGAAAAAGCGAAATTTATCGTTCAGTTTGAGCGT
TTAAATAATTTCGACATAAATGGGAAAGACTATATATCATTCTATATATCCACCAATGTAGGAGAACCTCCTAAATCTTT
GCCAAAAATTGCATCCGGTGGAGAATTATCGAGAATAATGCTTGCATTAAAAACCATTTTTTCATCGAAATCTCAAATTA
CATCCATCATTTTTGATGAAGTGGATACAGGTGTAAGCGGCCGCGTTGCACAGGCAATTGCTGAAAAAATCGCCAATATT
TCATTCAATTCACAAGTATTATGCATTTCTCATTTGCCTCAAGTTGCAGCAATGGCAGATCAGCATTACTTAATATCAAA
ACAAGTTGAACAAAACCGTACTTTTACGACAGTTCAAGTAATTGAAAATGATACACGAGTAGAAGAAATTAGTCGCATGA
TGAGTGGAACTGAAATTACAGAATTAACGTTGCAACATGCGCGAGAATTATTGCAATTGGCACTTATAAAGAAAAATGAA
ATCAAAGAACAATTAAAAAGTTCTACCTCGATGCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.494

99.476

0.512

Multiple sequence alignment