Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   ACKFA7_RS18780 Genome accession   NZ_CP175553
Coordinates   3849952..3851148 (-) Length   398 a.a.
NCBI ID   WP_007614967.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3844952..3856148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS18760 (ACKFA7_18760) - 3845275..3846597 (-) 1323 WP_038460527.1 ABC transporter substrate-binding protein -
  ACKFA7_RS18765 (ACKFA7_18765) - 3846594..3847601 (-) 1008 WP_038460529.1 ThiF family adenylyltransferase -
  ACKFA7_RS18770 (ACKFA7_18770) - 3847834..3849252 (-) 1419 WP_038460532.1 cell wall metabolism sensor histidine kinase WalK -
  ACKFA7_RS18775 (ACKFA7_18775) - 3849249..3849461 (-) 213 WP_032875422.1 winged helix-turn-helix domain-containing protein -
  ACKFA7_RS18780 (ACKFA7_18780) htrA 3849952..3851148 (-) 1197 WP_007614967.1 S1C family serine protease Regulator
  ACKFA7_RS18785 (ACKFA7_18785) vicX 3851235..3852029 (-) 795 WP_007614969.1 MBL fold metallo-hydrolase Regulator
  ACKFA7_RS18790 (ACKFA7_18790) - 3852044..3852883 (-) 840 WP_007614971.1 two-component system regulatory protein YycI -
  ACKFA7_RS18795 (ACKFA7_18795) yycH 3852870..3854228 (-) 1359 WP_015418614.1 two-component system activity regulator YycH -
  ACKFA7_RS18800 (ACKFA7_18800) walK 3854218..3856053 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 42633.44 Da        Isoelectric Point: 7.4580

>NTDB_id=965644 ACKFA7_RS18780 WP_007614967.1 3849952..3851148(-) (htrA) [Bacillus amyloliquefaciens strain 4-9-2]
MDYNRDDEQYASEQPRRSKRGYFLSSLIGVIVGAALMAFLLPYWTGGDHGESSKSTSQRLGSEQVKTVNVNVNDAVTNMV
SRVSDSVVGVLNIQKTDIWGEGGEAGSGSGVIYKKNGNTSYIVTNHHVIEGATEIEISLKDGSRVPAELIGSDRLMDLAV
LKVKSDKIKSAAQFGNSDQVKVGEPVIAIGNPLGLEFAGSVTQGIISGTERAVPVDSNGDGQPDWNAEVLQTDAAINPGN
SGGALMDISGKVVGINSMKIAESAVEGIGLSIPSKLVIPVIQDLEKYGEVRRPFLGIEMKSLTDIASYHWSQTLKLPKGV
KTGAVIMGVDAFSPAGKAGLKKLDVITGFDGHKVNDVVDLRERLYRKKIGDRVNITFYRSGKKKTAEVKLTEADRLQK

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=965644 ACKFA7_RS18780 WP_007614967.1 3849952..3851148(-) (htrA) [Bacillus amyloliquefaciens strain 4-9-2]
GTGGATTATAATCGCGATGATGAACAGTACGCCTCCGAACAGCCCCGCCGCAGCAAGAGAGGGTACTTTCTATCAAGTCT
GATCGGCGTCATCGTCGGGGCCGCGCTCATGGCATTCCTGCTGCCGTACTGGACAGGCGGAGACCATGGGGAAAGCAGCA
AAAGCACCAGCCAGCGTCTCGGCAGCGAACAGGTGAAAACAGTCAACGTAAATGTCAATGACGCTGTCACGAATATGGTC
AGCCGTGTATCAGATTCGGTAGTCGGCGTTCTCAATATCCAAAAGACCGATATTTGGGGAGAGGGCGGCGAAGCGGGAAG
CGGGTCGGGCGTCATTTACAAAAAGAACGGAAACACTTCTTATATCGTAACCAATCACCATGTCATTGAAGGTGCGACTG
AGATTGAGATCAGCCTGAAGGATGGCTCACGCGTGCCTGCTGAGCTGATCGGGAGCGACCGTCTGATGGATCTCGCGGTG
CTGAAGGTGAAGTCTGATAAGATCAAATCGGCCGCCCAGTTCGGCAATTCCGATCAGGTCAAAGTCGGAGAACCGGTCAT
TGCGATCGGAAATCCGCTCGGGCTTGAGTTTGCGGGATCAGTGACACAGGGGATCATTTCAGGCACGGAAAGGGCGGTGC
CTGTTGACTCAAACGGCGACGGACAGCCGGATTGGAATGCGGAAGTGCTGCAGACCGATGCCGCGATTAATCCCGGCAAC
AGCGGCGGCGCTTTGATGGATATATCGGGCAAGGTGGTCGGCATCAACTCAATGAAGATCGCTGAATCCGCCGTTGAAGG
AATCGGCCTGTCCATCCCGTCAAAGCTTGTCATTCCCGTTATTCAGGATTTAGAAAAATACGGAGAAGTCAGACGGCCTT
TTCTCGGTATTGAGATGAAATCCTTAACGGATATTGCGAGCTACCATTGGAGCCAGACGCTGAAACTTCCGAAAGGCGTT
AAAACCGGGGCAGTCATTATGGGTGTCGACGCGTTTTCACCGGCCGGAAAAGCGGGTTTGAAAAAGCTCGACGTGATTAC
CGGGTTCGACGGACATAAGGTCAATGACGTTGTGGATCTCCGTGAGCGCCTGTATCGCAAAAAGATCGGCGACCGTGTGA
ACATCACGTTCTACCGTTCGGGAAAGAAAAAAACAGCGGAAGTCAAACTGACAGAAGCGGATCGATTACAGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

43.434

99.497

0.432

  htrA Streptococcus mitis NCTC 12261

41.451

96.985

0.402

  htrA Streptococcus gordonii str. Challis substr. CH1

40.665

98.241

0.399


Multiple sequence alignment