Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NSU19_RS18555 Genome accession   NZ_CP150190
Coordinates   3874397..3874780 (-) Length   127 a.a.
NCBI ID   WP_339197983.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL k6-2211     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3867419..3893932 3874397..3874780 within 0


Gene organization within MGE regions


Location: 3867419..3893932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU19_RS18530 (NSU19_18530) - 3867419..3868165 (-) 747 WP_339197973.1 YveK family protein -
  NSU19_RS18535 (NSU19_18535) - 3868329..3868463 (-) 135 WP_339197976.1 hypothetical protein -
  NSU19_RS18540 (NSU19_18540) - 3868839..3868982 (-) 144 WP_186439282.1 hypothetical protein -
  NSU19_RS18545 (NSU19_18545) - 3869160..3870773 (+) 1614 WP_339197978.1 SWIM zinc finger family protein -
  NSU19_RS18550 (NSU19_18550) - 3870822..3873569 (+) 2748 WP_339197981.1 DEAD/DEAH box helicase -
  NSU19_RS18555 (NSU19_18555) ssbB 3874397..3874780 (-) 384 WP_339197983.1 single-stranded DNA-binding protein Machinery gene
  NSU19_RS18560 (NSU19_18560) - 3874928..3875323 (-) 396 WP_339197985.1 hypothetical protein -
  NSU19_RS18565 (NSU19_18565) - 3875585..3875986 (+) 402 WP_066248034.1 helix-turn-helix transcriptional regulator -
  NSU19_RS18570 (NSU19_18570) - 3876060..3876518 (+) 459 WP_063388992.1 YwpF-like family protein -
  NSU19_RS18575 (NSU19_18575) - 3876704..3877984 (-) 1281 WP_094246128.1 RNA-guided endonuclease TnpB family protein -
  NSU19_RS18580 (NSU19_18580) tnpA 3877985..3878401 (-) 417 WP_094246129.1 IS200/IS605 family transposase -
  NSU19_RS18585 (NSU19_18585) - 3878573..3878833 (-) 261 WP_339197989.1 hypothetical protein -
  NSU19_RS18590 (NSU19_18590) fabZ 3879323..3879745 (-) 423 WP_144597821.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NSU19_RS18595 (NSU19_18595) - 3879945..3880211 (-) 267 WP_094244698.1 DNA-directed RNA polymerase subunit beta -
  NSU19_RS18600 (NSU19_18600) - 3880402..3881232 (-) 831 WP_066248024.1 flagellar hook-basal body protein -
  NSU19_RS18605 (NSU19_18605) - 3881249..3882067 (-) 819 WP_339197992.1 flagellar hook-basal body protein -
  NSU19_RS18610 (NSU19_18610) - 3882996..3883997 (-) 1002 WP_063388998.1 rod shape-determining protein -
  NSU19_RS18615 (NSU19_18615) spoIIID 3884142..3884417 (-) 276 WP_063388999.1 sporulation transcriptional regulator SpoIIID -
  NSU19_RS18620 (NSU19_18620) - 3885015..3885974 (-) 960 WP_063389001.1 biotin-dependent carboxyltransferase family protein -
  NSU19_RS18625 (NSU19_18625) - 3885952..3886740 (-) 789 WP_339197994.1 5-oxoprolinase subunit PxpA -
  NSU19_RS18630 (NSU19_18630) pxpB 3886737..3887471 (-) 735 WP_339197996.1 5-oxoprolinase subunit PxpB -
  NSU19_RS18635 (NSU19_18635) - 3887933..3889213 (-) 1281 WP_094246128.1 RNA-guided endonuclease TnpB family protein -
  NSU19_RS18640 (NSU19_18640) tnpA 3889214..3889630 (-) 417 WP_094246129.1 IS200/IS605 family transposase -
  NSU19_RS18645 (NSU19_18645) - 3889912..3890415 (-) 504 WP_063389004.1 GNAT family N-acetyltransferase -
  NSU19_RS18650 (NSU19_18650) - 3890682..3891545 (-) 864 WP_339197998.1 M23 family metallopeptidase -
  NSU19_RS18655 (NSU19_18655) - 3891680..3892120 (+) 441 WP_339198000.1 VanZ family protein -
  NSU19_RS18660 (NSU19_18660) spoIID 3892913..3893932 (-) 1020 WP_063389007.1 stage II sporulation protein D -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14163.93 Da        Isoelectric Point: 8.4951

>NTDB_id=965637 NSU19_RS18555 WP_339197983.1 3874397..3874780(-) (ssbB) [Aeribacillus sp. FSL k6-2211]
MINHVTLVGRLTKDPEIRYTSEGAPVANITLAVSRNFRNAAGEIDTDFVHCTLWRRTAENTANYCRKGSIVGVIGRIQTR
NYENSEGKKVYVTEVVADSVRFMGTPPQRMRARELFDPESASGQSEA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=965637 NSU19_RS18555 WP_339197983.1 3874397..3874780(-) (ssbB) [Aeribacillus sp. FSL k6-2211]
GTGATCAACCATGTGACGCTCGTCGGTCGATTAACGAAGGATCCTGAAATCCGCTATACAAGTGAAGGGGCTCCTGTTGC
CAATATCACGCTGGCCGTGAGCCGCAACTTTCGCAATGCGGCAGGGGAAATCGACACAGATTTTGTTCATTGTACACTTT
GGAGACGAACAGCTGAAAATACTGCAAATTACTGCCGGAAAGGATCGATCGTTGGCGTAATCGGAAGAATTCAAACGCGC
AACTATGAAAACAGCGAGGGCAAAAAAGTGTACGTAACAGAAGTTGTTGCGGATTCCGTTCGATTTATGGGCACTCCGCC
GCAAAGAATGCGGGCAAGAGAGCTTTTCGATCCGGAATCCGCATCTGGACAGTCTGAGGCATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

68.75

88.189

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.136

81.102

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

57.282

81.102

0.465
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.119

85.827

0.37

Multiple sequence alignment