Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACKFA7_RS12750 Genome accession   NZ_CP175553
Coordinates   2664340..2665035 (-) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2659340..2670035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS12720 (ACKFA7_12720) - 2659355..2660158 (-) 804 WP_007408168.1 M23 family metallopeptidase -
  ACKFA7_RS12725 (ACKFA7_12725) minD 2660286..2661089 (-) 804 WP_016938784.1 septum site-determining protein MinD -
  ACKFA7_RS12730 (ACKFA7_12730) minC 2661092..2661772 (-) 681 WP_003152653.1 septum site-determining protein MinC -
  ACKFA7_RS12735 (ACKFA7_12735) mreD 2661826..2662344 (-) 519 WP_038459380.1 rod shape-determining protein MreD -
  ACKFA7_RS12740 (ACKFA7_12740) mreC 2662341..2663204 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  ACKFA7_RS12745 (ACKFA7_12745) mreB 2663235..2664248 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACKFA7_RS12750 (ACKFA7_12750) ysxA/radC 2664340..2665035 (-) 696 WP_007408165.1 RadC family protein Machinery gene
  ACKFA7_RS12755 (ACKFA7_12755) - 2665067..2665636 (-) 570 WP_012118105.1 nucleoside triphosphate pyrophosphatase -
  ACKFA7_RS12760 (ACKFA7_12760) - 2665777..2666778 (-) 1002 WP_038459383.1 SPOR domain-containing protein -
  ACKFA7_RS12765 (ACKFA7_12765) comC 2666905..2667657 (-) 753 WP_012118107.1 A24 family peptidase Machinery gene
  ACKFA7_RS12770 (ACKFA7_12770) - 2667798..2669090 (-) 1293 WP_038459385.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=965604 ACKFA7_RS12750 WP_007408165.1 2664340..2665035(-) (ysxA/radC) [Bacillus amyloliquefaciens strain 4-9-2]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=965604 ACKFA7_RS12750 WP_007408165.1 2664340..2665035(-) (ysxA/radC) [Bacillus amyloliquefaciens strain 4-9-2]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCTAGCATTCCCGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGTGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429