Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NSQ84_RS17160 Genome accession   NZ_CP150188
Coordinates   3576923..3577306 (-) Length   127 a.a.
NCBI ID   WP_063388989.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL K6-3256     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3571923..3582306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ84_RS17155 (NSQ84_17155) - 3573365..3576112 (+) 2748 WP_063388988.1 DEAD/DEAH box helicase -
  NSQ84_RS17160 (NSQ84_17160) ssbB 3576923..3577306 (-) 384 WP_063388989.1 single-stranded DNA-binding protein Machinery gene
  NSQ84_RS17165 (NSQ84_17165) - 3577454..3577849 (-) 396 WP_063388990.1 hypothetical protein -
  NSQ84_RS17170 (NSQ84_17170) - 3578109..3578510 (+) 402 WP_063388991.1 helix-turn-helix transcriptional regulator -
  NSQ84_RS17175 (NSQ84_17175) - 3578584..3579042 (+) 459 WP_063388992.1 YwpF-like family protein -
  NSQ84_RS17180 (NSQ84_17180) - 3579228..3579488 (-) 261 WP_063388993.1 hypothetical protein -
  NSQ84_RS17185 (NSQ84_17185) fabZ 3579975..3580397 (-) 423 WP_063388994.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NSQ84_RS17190 (NSQ84_17190) - 3580597..3580863 (-) 267 WP_063388995.1 DNA-directed RNA polymerase subunit beta -
  NSQ84_RS17195 (NSQ84_17195) - 3581050..3581880 (-) 831 WP_063388996.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14246.04 Da        Isoelectric Point: 7.8527

>NTDB_id=965546 NSQ84_RS17160 WP_063388989.1 3576923..3577306(-) (ssbB) [Aeribacillus sp. FSL K6-3256]
MINHVTLVGRLTKDPEIRYTSEGAPVANITLAVSRNFRNAAGEIDTDFVHCTLWRRTAENTANYCRKGSIVGVIGRIQTR
NYENSEGKKVYVTEVVADSVRFMGTPPQRMRARELFDPESAPEQSEA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=965546 NSQ84_RS17160 WP_063388989.1 3576923..3577306(-) (ssbB) [Aeribacillus sp. FSL K6-3256]
GTGATCAACCATGTGACGCTCGTCGGTCGATTAACGAAAGATCCTGAAATCCGCTATACAAGTGAAGGGGCTCCTGTTGC
CAATATTACGCTGGCTGTGAGCCGCAACTTTCGCAATGCGGCAGGGGAAATCGACACAGATTTTGTTCATTGTACACTTT
GGAGACGAACAGCTGAAAATACTGCAAATTACTGCCGGAAAGGATCGATCGTTGGCGTAATCGGAAGAATTCAAACGCGC
AACTATGAAAACAGCGAGGGCAAAAAAGTGTACGTAACAGAAGTTGTTGCGGATTCCGTTCGATTTATGGGCACGCCGCC
GCAAAGAATGCGGGCAAGAGAGCTTTTCGATCCGGAATCCGCACCTGAACAGTCTGAGGCATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

68.75

88.189

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.136

81.102

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

57.282

81.102

0.465
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.119

85.827

0.37

Multiple sequence alignment