Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NSQ36_RS11260 Genome accession   NZ_CP150182
Coordinates   2237748..2238041 (-) Length   97 a.a.
NCBI ID   WP_003217322.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-1143     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2232748..2243041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ36_RS11210 (NSQ36_11210) sinR 2232911..2233246 (+) 336 WP_339207351.1 helix-turn-helix domain-containing protein Regulator
  NSQ36_RS11215 (NSQ36_11215) - 2233314..2234114 (-) 801 WP_003217403.1 TasA family protein -
  NSQ36_RS11220 (NSQ36_11220) - 2234172..2234744 (-) 573 WP_003217306.1 signal peptidase I -
  NSQ36_RS11225 (NSQ36_11225) tapA 2234796..2235323 (-) 528 WP_339205720.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ36_RS11230 (NSQ36_11230) - 2235623..2235901 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  NSQ36_RS11235 (NSQ36_11235) - 2235935..2236129 (-) 195 WP_034620826.1 YqzE family protein -
  NSQ36_RS11240 (NSQ36_11240) comGG 2236189..2236572 (-) 384 WP_106033140.1 competence type IV pilus minor pilin ComGG -
  NSQ36_RS11245 (NSQ36_11245) comGF 2236569..2237099 (-) 531 WP_339205722.1 competence type IV pilus minor pilin ComGF -
  NSQ36_RS11250 (NSQ36_11250) comGE 2237008..2237325 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  NSQ36_RS11255 (NSQ36_11255) comGD 2237309..2237755 (-) 447 WP_003217424.1 competence type IV pilus minor pilin ComGD -
  NSQ36_RS11260 (NSQ36_11260) comGC 2237748..2238041 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  NSQ36_RS11265 (NSQ36_11265) comGB 2238058..2239098 (-) 1041 WP_339205725.1 competence type IV pilus assembly protein ComGB -
  NSQ36_RS11270 (NSQ36_11270) comGA 2239079..2240149 (-) 1071 WP_081106456.1 competence type IV pilus ATPase ComGA Machinery gene
  NSQ36_RS11275 (NSQ36_11275) - 2240327..2241199 (-) 873 WP_003217438.1 STAS domain-containing protein -
  NSQ36_RS11285 (NSQ36_11285) - 2241423..2241803 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NSQ36_RS11290 (NSQ36_11290) - 2242016..2242258 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10739.69 Da        Isoelectric Point: 7.3837

>NTDB_id=965296 NSQ36_RS11260 WP_003217322.1 2237748..2238041(-) (comGC) [Bacillus sp. FSL W8-1143]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=965296 NSQ36_RS11260 WP_003217322.1 2237748..2238041(-) (comGC) [Bacillus sp. FSL W8-1143]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCGATTCTTTTACTGATTACCATTCC
GAATATTACTCGTCACCACCAAACGATTCAAGCGAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACTCAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTTAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment