Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NSQ36_RS11270 Genome accession   NZ_CP150182
Coordinates   2239079..2240149 (-) Length   356 a.a.
NCBI ID   WP_081106456.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-1143     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2234079..2245149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ36_RS11220 (NSQ36_11220) - 2234172..2234744 (-) 573 WP_003217306.1 signal peptidase I -
  NSQ36_RS11225 (NSQ36_11225) tapA 2234796..2235323 (-) 528 WP_339205720.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ36_RS11230 (NSQ36_11230) - 2235623..2235901 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  NSQ36_RS11235 (NSQ36_11235) - 2235935..2236129 (-) 195 WP_034620826.1 YqzE family protein -
  NSQ36_RS11240 (NSQ36_11240) comGG 2236189..2236572 (-) 384 WP_106033140.1 competence type IV pilus minor pilin ComGG -
  NSQ36_RS11245 (NSQ36_11245) comGF 2236569..2237099 (-) 531 WP_339205722.1 competence type IV pilus minor pilin ComGF -
  NSQ36_RS11250 (NSQ36_11250) comGE 2237008..2237325 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  NSQ36_RS11255 (NSQ36_11255) comGD 2237309..2237755 (-) 447 WP_003217424.1 competence type IV pilus minor pilin ComGD -
  NSQ36_RS11260 (NSQ36_11260) comGC 2237748..2238041 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  NSQ36_RS11265 (NSQ36_11265) comGB 2238058..2239098 (-) 1041 WP_339205725.1 competence type IV pilus assembly protein ComGB -
  NSQ36_RS11270 (NSQ36_11270) comGA 2239079..2240149 (-) 1071 WP_081106456.1 competence type IV pilus ATPase ComGA Machinery gene
  NSQ36_RS11275 (NSQ36_11275) - 2240327..2241199 (-) 873 WP_003217438.1 STAS domain-containing protein -
  NSQ36_RS11285 (NSQ36_11285) - 2241423..2241803 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NSQ36_RS11290 (NSQ36_11290) - 2242016..2242258 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  NSQ36_RS11295 (NSQ36_11295) - 2242503..2243141 (-) 639 WP_003217463.1 MBL fold metallo-hydrolase -
  NSQ36_RS11300 (NSQ36_11300) - 2243299..2243472 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  NSQ36_RS11305 (NSQ36_11305) - 2243696..2244010 (-) 315 WP_226803664.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40352.75 Da        Isoelectric Point: 9.2484

>NTDB_id=965297 NSQ36_RS11270 WP_081106456.1 2239079..2240149(-) (comGA) [Bacillus sp. FSL W8-1143]
MYGIEYLGQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRRGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASTRLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGETCQLYCKLNRPVRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=965297 NSQ36_RS11270 WP_081106456.1 2239079..2240149(-) (comGA) [Bacillus sp. FSL W8-1143]
TTGTATGGGATTGAATATTTGGGACAAGAGCTGCTAGAAGAAGCATGCCGCATGAGAGCATCTGATGTGCACATTGTTCC
AAAGGAAAAGGAAGCGTCGGTATCTTTCCGCGTAGACTCAGATTTAATTCAGCAGCGAACCATTGATAAAAAAAGCGGCG
AGCGGCTCATTGCTCATTTTAAATTTTTATCATCCATGGATATCGGAGAAAAACGGAGACCGCAAAATGGGTCATTAGCT
GTGATGCTAAGAAGGGGTCAGGTGTTTATTAGGATGTCTACCCTACCAACTGTAAATGATGAGAGCTTAGTGATTAGAAT
ATTGCCGCAGGATCATGTTCCAAAAATAAAACATCTGTCACTATTTCCGAAAGCATCCACCAGGTTATTATCATTTTTGA
ATCATTCGCATGGGCTCATTTTATTTACCGGTCCAACCAATTCAGGGAAAACAACAACCCTTTATTCATTGATCCAGTTT
GCAAAAAAGAATTTCAACAGAAATATTATTACACTTGAAGATCCTGTGGAAACGAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCCGGTATCACATATGCGGCAGGATTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACGGCTCGAACGGCAATTAGAGCAGCTCTGACAGGCCATTTAGTGATGAGTACACTCCAT
GCGAAAAATGCAAAAGGAGCCCTTTATCGTATGCTTGAATTTGGTGTCACGATGAATGAACTCGAACAAACGATGGTGGC
GATTGCTGCGCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAACATGCCAGCTTTACTGTAAATTAAATCGAC
CGGTCAGACGAACAAATGTATTTGAACTGCTGTTCGGAAAGGAGCTTGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACATTGCAAAGATTAATTCGTAAAGGAGTGGCACTAGGCTATTTATCGAAAAACACCTATCA
TCGCTGGGTTTATGAAGAAGCAAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.407

99.438

0.64

Multiple sequence alignment