Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NSQ36_RS11210 | Genome accession | NZ_CP150182 |
| Coordinates | 2232911..2233246 (+) | Length | 111 a.a. |
| NCBI ID | WP_339207351.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL W8-1143 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2227911..2238246
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ36_RS11190 (NSQ36_11190) | gcvT | 2228389..2229486 (-) | 1098 | WP_339205717.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NSQ36_RS11195 (NSQ36_11195) | - | 2230048..2231718 (+) | 1671 | WP_137054982.1 | SNF2-related protein | - |
| NSQ36_RS11200 (NSQ36_11200) | - | 2231733..2232530 (+) | 798 | WP_106033137.1 | YqhG family protein | - |
| NSQ36_RS11205 (NSQ36_11205) | - | 2232713..2232877 (+) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| NSQ36_RS11210 (NSQ36_11210) | sinR | 2232911..2233246 (+) | 336 | WP_339207351.1 | helix-turn-helix domain-containing protein | Regulator |
| NSQ36_RS11215 (NSQ36_11215) | - | 2233314..2234114 (-) | 801 | WP_003217403.1 | TasA family protein | - |
| NSQ36_RS11220 (NSQ36_11220) | - | 2234172..2234744 (-) | 573 | WP_003217306.1 | signal peptidase I | - |
| NSQ36_RS11225 (NSQ36_11225) | tapA | 2234796..2235323 (-) | 528 | WP_339205720.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NSQ36_RS11230 (NSQ36_11230) | - | 2235623..2235901 (+) | 279 | WP_003217457.1 | DUF3889 domain-containing protein | - |
| NSQ36_RS11235 (NSQ36_11235) | - | 2235935..2236129 (-) | 195 | WP_034620826.1 | YqzE family protein | - |
| NSQ36_RS11240 (NSQ36_11240) | comGG | 2236189..2236572 (-) | 384 | WP_106033140.1 | competence type IV pilus minor pilin ComGG | - |
| NSQ36_RS11245 (NSQ36_11245) | comGF | 2236569..2237099 (-) | 531 | WP_339205722.1 | competence type IV pilus minor pilin ComGF | - |
| NSQ36_RS11250 (NSQ36_11250) | comGE | 2237008..2237325 (-) | 318 | WP_003217390.1 | competence type IV pilus minor pilin ComGE | - |
| NSQ36_RS11255 (NSQ36_11255) | comGD | 2237309..2237755 (-) | 447 | WP_003217424.1 | competence type IV pilus minor pilin ComGD | - |
| NSQ36_RS11260 (NSQ36_11260) | comGC | 2237748..2238041 (-) | 294 | WP_003217322.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12987.57 Da Isoelectric Point: 5.2831
>NTDB_id=965295 NSQ36_RS11210 WP_339207351.1 2232911..2233246(+) (sinR) [Bacillus sp. FSL W8-1143]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDESEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDESEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=965295 NSQ36_RS11210 WP_339207351.1 2232911..2233246(+) (sinR) [Bacillus sp. FSL W8-1143]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAATCCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAATCCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |