Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSU05_RS20795 Genome accession   NZ_CP150177
Coordinates   4042366..4042884 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus sp. EU52     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4037366..4047884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU05_RS20765 (NSU05_20765) - 4037869..4039224 (+) 1356 WP_029318525.1 MFS transporter -
  NSU05_RS20770 (NSU05_20770) - 4039258..4039812 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  NSU05_RS20775 (NSU05_20775) - 4039830..4040210 (-) 381 WP_003244460.1 VOC family protein -
  NSU05_RS20780 (NSU05_20780) ccpB 4040266..4041201 (-) 936 WP_038429968.1 transcriptional regulator CcpB -
  NSU05_RS20785 (NSU05_20785) xth 4041260..4042018 (-) 759 WP_038429969.1 exodeoxyribonuclease III -
  NSU05_RS20790 (NSU05_20790) rpsR 4042083..4042322 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  NSU05_RS20795 (NSU05_20795) ssbA 4042366..4042884 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  NSU05_RS20800 (NSU05_20800) rpsF 4042925..4043212 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  NSU05_RS20805 (NSU05_20805) ychF 4043323..4044423 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  NSU05_RS20810 (NSU05_20810) - 4044550..4046553 (-) 2004 WP_038429970.1 molybdopterin-dependent oxidoreductase -
  NSU05_RS20815 (NSU05_20815) - 4046604..4046810 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=965122 NSU05_RS20795 WP_003219228.1 4042366..4042884(-) (ssbA) [Bacillus sp. EU52]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=965122 NSU05_RS20795 WP_003219228.1 4042366..4042884(-) (ssbA) [Bacillus sp. EU52]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment