Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   NSU05_RS12360 Genome accession   NZ_CP150177
Coordinates   2426652..2427035 (-) Length   127 a.a.
NCBI ID   WP_038429292.1    Uniprot ID   -
Organism   Bacillus sp. EU52     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2421652..2432035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU05_RS12320 (NSU05_12320) sinI 2422586..2422759 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  NSU05_RS12325 (NSU05_12325) sinR 2422793..2423128 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NSU05_RS12330 (NSU05_12330) tasA 2423221..2424006 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  NSU05_RS12335 (NSU05_12335) - 2424070..2424642 (-) 573 WP_003230181.1 signal peptidase I -
  NSU05_RS12340 (NSU05_12340) tapA 2424626..2425387 (-) 762 WP_015714251.1 amyloid fiber anchoring/assembly protein TapA -
  NSU05_RS12345 (NSU05_12345) - 2425659..2425985 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NSU05_RS12350 (NSU05_12350) - 2426027..2426206 (-) 180 WP_014480252.1 YqzE family protein -
  NSU05_RS12355 (NSU05_12355) comGG 2426277..2426651 (-) 375 WP_015714252.1 ComG operon protein ComGG Machinery gene
  NSU05_RS12360 (NSU05_12360) comGF 2426652..2427035 (-) 384 WP_038429292.1 ComG operon protein ComGF Machinery gene
  NSU05_RS12365 (NSU05_12365) comGE 2427061..2427408 (-) 348 WP_015714254.1 ComG operon protein 5 Machinery gene
  NSU05_RS12370 (NSU05_12370) comGD 2427392..2427823 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  NSU05_RS12375 (NSU05_12375) comGC 2427813..2428109 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  NSU05_RS12380 (NSU05_12380) comGB 2428123..2429160 (-) 1038 WP_015714257.1 comG operon protein ComGB Machinery gene
  NSU05_RS12385 (NSU05_12385) comGA 2429147..2430217 (-) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  NSU05_RS12390 (NSU05_12390) corA 2430629..2431582 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14547.68 Da        Isoelectric Point: 6.4849

>NTDB_id=965087 NSU05_RS12360 WP_038429292.1 2426652..2427035(-) (comGF) [Bacillus sp. EU52]
MLISGSLAAIFHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSRQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADFENGVVLLKIESEDQKVYQTAFPVYSYLGGR

Nucleotide


Download         Length: 384 bp        

>NTDB_id=965087 NSU05_RS12360 WP_038429292.1 2426652..2427035(-) (comGF) [Bacillus sp. EU52]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCAGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATTTTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGAGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

97.619

99.213

0.969

Multiple sequence alignment