Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NSU05_RS12325 | Genome accession | NZ_CP150177 |
| Coordinates | 2422793..2423128 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus sp. EU52 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2417793..2428128
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSU05_RS12305 (NSU05_12305) | gcvT | 2418385..2419473 (-) | 1089 | WP_015714248.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NSU05_RS12310 (NSU05_12310) | - | 2419915..2421588 (+) | 1674 | WP_003230203.1 | SNF2-related protein | - |
| NSU05_RS12315 (NSU05_12315) | - | 2421609..2422403 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| NSU05_RS12320 (NSU05_12320) | sinI | 2422586..2422759 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| NSU05_RS12325 (NSU05_12325) | sinR | 2422793..2423128 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| NSU05_RS12330 (NSU05_12330) | tasA | 2423221..2424006 (-) | 786 | WP_014480250.1 | biofilm matrix protein TasA | - |
| NSU05_RS12335 (NSU05_12335) | - | 2424070..2424642 (-) | 573 | WP_003230181.1 | signal peptidase I | - |
| NSU05_RS12340 (NSU05_12340) | tapA | 2424626..2425387 (-) | 762 | WP_015714251.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NSU05_RS12345 (NSU05_12345) | - | 2425659..2425985 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| NSU05_RS12350 (NSU05_12350) | - | 2426027..2426206 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| NSU05_RS12355 (NSU05_12355) | comGG | 2426277..2426651 (-) | 375 | WP_015714252.1 | ComG operon protein ComGG | Machinery gene |
| NSU05_RS12360 (NSU05_12360) | comGF | 2426652..2427035 (-) | 384 | WP_038429292.1 | ComG operon protein ComGF | Machinery gene |
| NSU05_RS12365 (NSU05_12365) | comGE | 2427061..2427408 (-) | 348 | WP_015714254.1 | ComG operon protein 5 | Machinery gene |
| NSU05_RS12370 (NSU05_12370) | comGD | 2427392..2427823 (-) | 432 | WP_014480256.1 | comG operon protein ComGD | Machinery gene |
| NSU05_RS12375 (NSU05_12375) | comGC | 2427813..2428109 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=965085 NSU05_RS12325 WP_003226345.1 2422793..2423128(+) (sinR) [Bacillus sp. EU52]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=965085 NSU05_RS12325 WP_003226345.1 2422793..2423128(+) (sinR) [Bacillus sp. EU52]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |