Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSU16_RS20470 Genome accession   NZ_CP150176
Coordinates   4015563..4016081 (-) Length   172 a.a.
NCBI ID   WP_010332657.1    Uniprot ID   A0A9Q6ABZ4
Organism   Bacillus sp. FSL K6-1003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4010563..4021081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS20440 (NSU16_20440) - 4011073..4012425 (+) 1353 WP_326330133.1 MFS transporter -
  NSU16_RS20445 (NSU16_20445) - 4012457..4013011 (-) 555 WP_339191839.1 maltose acetyltransferase domain-containing protein -
  NSU16_RS20450 (NSU16_20450) - 4013030..4013410 (-) 381 WP_326218755.1 VOC family protein -
  NSU16_RS20455 (NSU16_20455) - 4013462..4014403 (-) 942 WP_339191842.1 LacI family DNA-binding transcriptional regulator -
  NSU16_RS20460 (NSU16_20460) xth 4014462..4015220 (-) 759 WP_010332655.1 exodeoxyribonuclease III -
  NSU16_RS20465 (NSU16_20465) rpsR 4015281..4015520 (-) 240 WP_010332656.1 30S ribosomal protein S18 -
  NSU16_RS20470 (NSU16_20470) ssbA 4015563..4016081 (-) 519 WP_010332657.1 single-stranded DNA-binding protein SsbA Machinery gene
  NSU16_RS20475 (NSU16_20475) rpsF 4016120..4016407 (-) 288 WP_010332658.1 30S ribosomal protein S6 -
  NSU16_RS20480 (NSU16_20480) ychF 4016518..4017618 (-) 1101 WP_326130499.1 redox-regulated ATPase YchF -
  NSU16_RS20485 (NSU16_20485) - 4017745..4019748 (-) 2004 WP_339191843.1 molybdopterin-dependent oxidoreductase -
  NSU16_RS20490 (NSU16_20490) - 4019799..4020005 (-) 207 WP_010332661.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18715.28 Da        Isoelectric Point: 4.7621

>NTDB_id=965043 NSU16_RS20470 WP_010332657.1 4015563..4016081(-) (ssbA) [Bacillus sp. FSL K6-1003]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=965043 NSU16_RS20470 WP_010332657.1 4015563..4016081(-) (ssbA) [Bacillus sp. FSL K6-1003]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCTGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGGCAGCGTGTCTTCGTGACCGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

99.419

100

0.994
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

36.066

100

0.384

Multiple sequence alignment