Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSU16_RS15575 Genome accession   NZ_CP150176
Coordinates   3035031..3035675 (-) Length   214 a.a.
NCBI ID   WP_010331690.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3030031..3040675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS15540 (NSU16_15540) - 3031224..3031655 (+) 432 WP_339191425.1 Na(+)/H(+) antiporter subunit B -
  NSU16_RS15545 (NSU16_15545) - 3031655..3031996 (+) 342 WP_010331684.1 Na(+)/H(+) antiporter subunit C -
  NSU16_RS15550 (NSU16_15550) - 3031989..3033470 (+) 1482 WP_339191426.1 Na+/H+ antiporter subunit D -
  NSU16_RS15555 (NSU16_15555) - 3033476..3033952 (+) 477 WP_010331686.1 Na+/H+ antiporter subunit E -
  NSU16_RS15560 (NSU16_15560) - 3033952..3034236 (+) 285 WP_010331687.1 Na(+)/H(+) antiporter subunit F1 -
  NSU16_RS15565 (NSU16_15565) mnhG 3034220..3034594 (+) 375 WP_010331688.1 monovalent cation/H(+) antiporter subunit G -
  NSU16_RS15570 (NSU16_15570) - 3034633..3035013 (-) 381 WP_229149090.1 hotdog fold thioesterase -
  NSU16_RS15575 (NSU16_15575) comA 3035031..3035675 (-) 645 WP_010331690.1 two-component system response regulator ComA Regulator
  NSU16_RS15580 (NSU16_15580) comP 3035756..3038065 (-) 2310 WP_339192701.1 two-component system sensor histidine kinase ComP Regulator
  NSU16_RS15585 (NSU16_15585) comX 3038081..3038248 (-) 168 WP_044158946.1 competence pheromone ComX Regulator
  NSU16_RS15590 (NSU16_15590) comQ 3038232..3039134 (-) 903 WP_168749496.1 polyprenyl synthetase family protein Regulator
  NSU16_RS15595 (NSU16_15595) degQ 3039319..3039459 (-) 141 WP_010331694.1 degradation enzyme regulation protein DegQ Regulator
  NSU16_RS15600 (NSU16_15600) - 3039920..3040288 (+) 369 WP_268447270.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24142.49 Da        Isoelectric Point: 4.6801

>NTDB_id=965025 NSU16_RS15575 WP_010331690.1 3035031..3035675(-) (comA) [Bacillus sp. FSL K6-1003]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIRQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=965025 NSU16_RS15575 WP_010331690.1 3035031..3035675(-) (comA) [Bacillus sp. FSL K6-1003]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACGCCAGCATGATTTCTCATCATATGATCTCATTTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCTGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGAAATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCCGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.065

100

0.991

Multiple sequence alignment