Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NSU16_RS12685 Genome accession   NZ_CP150176
Coordinates   2485929..2486546 (-) Length   205 a.a.
NCBI ID   WP_268504969.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2480929..2491546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS12655 (NSU16_12655) rpsT 2481232..2481498 (+) 267 WP_010335003.1 30S ribosomal protein S20 -
  NSU16_RS12660 (NSU16_12660) holA 2481516..2482556 (-) 1041 WP_010335004.1 DNA polymerase III subunit delta -
  NSU16_RS12665 (NSU16_12665) - 2482596..2482745 (-) 150 WP_003229985.1 hypothetical protein -
  NSU16_RS12670 (NSU16_12670) - 2482786..2482920 (+) 135 WP_010335005.1 YqzM family protein -
  NSU16_RS12675 (NSU16_12675) comEC 2482959..2485289 (-) 2331 WP_268505137.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NSU16_RS12680 (NSU16_12680) - 2485293..2485862 (-) 570 WP_010335007.1 ComE operon protein 2 -
  NSU16_RS12685 (NSU16_12685) comEA 2485929..2486546 (-) 618 WP_268504969.1 helix-hairpin-helix domain-containing protein Machinery gene
  NSU16_RS12690 (NSU16_12690) comER 2486630..2487451 (+) 822 WP_268449344.1 late competence protein ComER -
  NSU16_RS12695 (NSU16_12695) - 2487516..2488259 (-) 744 WP_268504968.1 class I SAM-dependent methyltransferase -
  NSU16_RS12700 (NSU16_12700) rsfS 2488256..2488612 (-) 357 WP_168748278.1 ribosome silencing factor -
  NSU16_RS12705 (NSU16_12705) yqeK 2488630..2489190 (-) 561 WP_168748279.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NSU16_RS12710 (NSU16_12710) - 2489180..2489749 (-) 570 WP_010335014.1 nicotinate-nucleotide adenylyltransferase -
  NSU16_RS12715 (NSU16_12715) yhbY 2489760..2490050 (-) 291 WP_268504967.1 ribosome assembly RNA-binding protein YhbY -
  NSU16_RS12720 (NSU16_12720) aroE 2490050..2490886 (-) 837 WP_268504966.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22106.09 Da        Isoelectric Point: 4.6750

>NTDB_id=965015 NSU16_RS12685 WP_268504969.1 2485929..2486546(-) (comEA) [Bacillus sp. FSL K6-1003]
MNWLNQHKMIIMSVAFAAVLIAVLCLFFFIGHNKEPVKQVISSEKDNAEVKQEVTKDKAEENIVIDIKGAVKHPGVYEMH
AGDRVSQAIEKAGGIGEKADETQVNLAELLQDGTVVYIPSEGEEEPPQAAGGAVQSSTGKEALVNINTATLEDLQNISGV
GPSKAEAIIAYREENGRFQAIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=965015 NSU16_RS12685 WP_268504969.1 2485929..2486546(-) (comEA) [Bacillus sp. FSL K6-1003]
TTGAATTGGTTGAATCAACATAAAATGATCATCATGTCAGTGGCCTTTGCTGCTGTTCTCATTGCGGTTCTTTGTCTCTT
TTTTTTCATCGGGCATAACAAAGAGCCTGTAAAACAAGTGATATCTAGTGAAAAGGATAATGCTGAGGTTAAGCAGGAAG
TGACAAAAGACAAAGCGGAAGAAAATATTGTAATTGACATAAAAGGTGCTGTTAAGCATCCCGGCGTTTATGAAATGCAT
GCAGGGGACAGAGTGTCACAGGCTATTGAGAAAGCAGGAGGCATCGGCGAAAAAGCAGATGAAACGCAAGTGAATTTGGC
GGAACTTTTGCAGGACGGTACAGTGGTGTATATACCGAGTGAGGGAGAAGAGGAGCCGCCGCAAGCGGCCGGAGGTGCTG
TACAAAGCAGCACGGGGAAAGAGGCCTTGGTCAATATCAATACAGCAACATTAGAGGATTTACAAAACATTTCAGGAGTA
GGGCCTTCAAAAGCCGAAGCGATTATTGCATATCGGGAAGAGAACGGGCGTTTCCAGGCAATTGAAGATATCACAAAGGT
TTCGGGAATTGGCGAAAAATCATTTGAAAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(64-119)

Helix-hairpin-helix motif (HHH_3)

(141-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

73.786

100

0.741
  comEA Staphylococcus aureus MW2

38.182

100

0.41
  comEA Staphylococcus aureus N315

37.387

100

0.405

Multiple sequence alignment