Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSS75_RS19045 Genome accession   NZ_CP150175
Coordinates   3667869..3669263 (-) Length   464 a.a.
NCBI ID   WP_268497413.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1012     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3662869..3674263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS75_RS19010 (NSS75_19010) flgL 3663045..3663941 (-) 897 WP_095712912.1 flagellar hook-associated protein FlgL -
  NSS75_RS19015 (NSS75_19015) flgK 3663951..3665474 (-) 1524 WP_339234449.1 flagellar hook-associated protein FlgK -
  NSS75_RS19020 (NSS75_19020) flgN 3665493..3665975 (-) 483 WP_103671257.1 flagellar protein FlgN -
  NSS75_RS19025 (NSS75_19025) flgM 3665991..3666257 (-) 267 WP_003219712.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSS75_RS19030 (NSS75_19030) - 3666337..3666756 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  NSS75_RS19035 (NSS75_19035) comFC 3666830..3667552 (-) 723 WP_024123027.1 amidophosphoribosyltransferase Machinery gene
  NSS75_RS19040 (NSS75_19040) - 3667516..3667812 (-) 297 WP_103671256.1 late competence development ComFB family protein -
  NSS75_RS19045 (NSS75_19045) comFA 3667869..3669263 (-) 1395 WP_268497413.1 ATP-dependent helicase ComFA Machinery gene
  NSS75_RS19050 (NSS75_19050) - 3669370..3670215 (-) 846 WP_268497415.1 DegV family protein -
  NSS75_RS19055 (NSS75_19055) degU 3670312..3671001 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSS75_RS19060 (NSS75_19060) degS 3671084..3672241 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  NSS75_RS19065 (NSS75_19065) - 3672458..3673111 (+) 654 WP_044159478.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52908.03 Da        Isoelectric Point: 9.6545

>NTDB_id=964951 NSS75_RS19045 WP_268497413.1 3667869..3669263(-) (comFA) [Bacillus sp. FSL K6-1012]
MQTKTSESNSLFSKELQQQLQGRHLLKTEIPFSDEIIDWHIEHGYISAEESISKNKWGYRCNRCGQNDQQYFSSYISSGE
DKVYCRSCVMMGRVSEDISLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFQG
IESALNLRLRVCIATPRTDVVLELAPRLKAAFQGADISVLYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLIRNKIPNAVK
RWIEQHVKEGRPVFLFVPSISILEKAASCFKNMNYRTASVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=964951 NSS75_RS19045 WP_268497413.1 3667869..3669263(-) (comFA) [Bacillus sp. FSL K6-1012]
ATGCAGACTAAGACATCAGAATCGAACAGCCTATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTTAA
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGAGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATATTTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATATTTCTTTATATTCCTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTGTCAAGCGGACAGCAAAAGGCAGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCAAGGT
ATAGAATCGGCATTAAATCTAAGACTGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTTTTAGAGCTTGCTCCGAG
ACTGAAGGCTGCATTTCAGGGTGCTGATATTTCAGTTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGCTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGTACGCTTGTTTATCTAAGCGCCAC
ACCTCCTAAAGAATTAAAAAGAAAAACATATAAAGGTGAGTTGAAGTCCGTTCGCATACCGGCCAGATACCACCGGAAGC
CGTTGCCTGAACCGCGCTTTCAATGGTGCGGAAACTGGAAAAAGAAATTAATCCGAAATAAGATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTAAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCGTCCATTTCTATTCTGGAAAAGGCTGC
TTCTTGTTTTAAAAATATGAATTATCGAACAGCGTCTGTACATGCGGAAGACAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAACATATAAAAATAATGA
ATGAATTGGCTTTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.498

98.707

0.834
  comFA/cflA Streptococcus mitis SK321

40.482

89.44

0.362

Multiple sequence alignment