Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSS75_RS19055 Genome accession   NZ_CP150175
Coordinates   3670312..3671001 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL K6-1012     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3665312..3676001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS75_RS19020 (NSS75_19020) flgN 3665493..3665975 (-) 483 WP_103671257.1 flagellar protein FlgN -
  NSS75_RS19025 (NSS75_19025) flgM 3665991..3666257 (-) 267 WP_003219712.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSS75_RS19030 (NSS75_19030) - 3666337..3666756 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  NSS75_RS19035 (NSS75_19035) comFC 3666830..3667552 (-) 723 WP_024123027.1 amidophosphoribosyltransferase Machinery gene
  NSS75_RS19040 (NSS75_19040) - 3667516..3667812 (-) 297 WP_103671256.1 late competence development ComFB family protein -
  NSS75_RS19045 (NSS75_19045) comFA 3667869..3669263 (-) 1395 WP_268497413.1 ATP-dependent helicase ComFA Machinery gene
  NSS75_RS19050 (NSS75_19050) - 3669370..3670215 (-) 846 WP_268497415.1 DegV family protein -
  NSS75_RS19055 (NSS75_19055) degU 3670312..3671001 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSS75_RS19060 (NSS75_19060) degS 3671084..3672241 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  NSS75_RS19065 (NSS75_19065) - 3672458..3673111 (+) 654 WP_044159478.1 YigZ family protein -
  NSS75_RS19070 (NSS75_19070) - 3673111..3674289 (+) 1179 WP_024123032.1 LCP family protein -
  NSS75_RS19075 (NSS75_19075) - 3674365..3675441 (-) 1077 WP_010332075.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=964952 NSS75_RS19055 WP_003219701.1 3670312..3671001(-) (degU) [Bacillus sp. FSL K6-1012]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=964952 NSS75_RS19055 WP_003219701.1 3670312..3671001(-) (degU) [Bacillus sp. FSL K6-1012]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment