Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NSS75_RS13135 Genome accession   NZ_CP150175
Coordinates   2553317..2553652 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus sp. FSL K6-1012     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2548317..2558652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS75_RS13115 (NSS75_13115) gcvT 2548907..2549995 (-) 1089 WP_101861031.1 glycine cleavage system aminomethyltransferase GcvT -
  NSS75_RS13120 (NSS75_13120) - 2550439..2552112 (+) 1674 WP_101861177.1 SNF2-related protein -
  NSS75_RS13125 (NSS75_13125) - 2552132..2552926 (+) 795 WP_101861032.1 YqhG family protein -
  NSS75_RS13130 (NSS75_13130) sinI 2553110..2553283 (+) 174 WP_024122036.1 anti-repressor SinI family protein Regulator
  NSS75_RS13135 (NSS75_13135) sinR 2553317..2553652 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NSS75_RS13140 (NSS75_13140) tasA 2553739..2554524 (-) 786 WP_024122037.1 biofilm matrix protein TasA -
  NSS75_RS13145 (NSS75_13145) - 2554589..2555173 (-) 585 WP_268496720.1 signal peptidase I -
  NSS75_RS13150 (NSS75_13150) tapA 2555145..2555906 (-) 762 WP_101861034.1 amyloid fiber anchoring/assembly protein TapA -
  NSS75_RS13155 (NSS75_13155) - 2556183..2556506 (+) 324 WP_024122040.1 YqzG/YhdC family protein -
  NSS75_RS13160 (NSS75_13160) - 2556549..2556728 (-) 180 WP_101861035.1 YqzE family protein -
  NSS75_RS13165 (NSS75_13165) comGG 2556800..2557174 (-) 375 WP_059335411.1 competence type IV pilus minor pilin ComGG Machinery gene
  NSS75_RS13170 (NSS75_13170) comGF 2557175..2557558 (-) 384 WP_038954226.1 competence type IV pilus minor pilin ComGF Machinery gene
  NSS75_RS13175 (NSS75_13175) comGE 2557584..2557931 (-) 348 WP_339233339.1 competence type IV pilus minor pilin ComGE Machinery gene
  NSS75_RS13180 (NSS75_13180) comGD 2557915..2558346 (-) 432 WP_024122044.1 competence type IV pilus minor pilin ComGD Machinery gene
  NSS75_RS13185 (NSS75_13185) comGC 2558336..2558632 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=964923 NSS75_RS13135 WP_003226345.1 2553317..2553652(+) (sinR) [Bacillus sp. FSL K6-1012]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=964923 NSS75_RS13135 WP_003226345.1 2553317..2553652(+) (sinR) [Bacillus sp. FSL K6-1012]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCAGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCTGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment