Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACICHK_RS28235 Genome accession   NZ_CP174283
Coordinates   6319417..6321630 (+) Length   737 a.a.
NCBI ID   WP_406839051.1    Uniprot ID   -
Organism   Streptomyces sp. AHU1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6314417..6326630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICHK_RS28230 (ACICHK_28230) - 6317412..6319250 (-) 1839 WP_151472136.1 HSP90 family protein -
  ACICHK_RS28235 (ACICHK_28235) recG 6319417..6321630 (+) 2214 WP_406839051.1 ATP-dependent DNA helicase RecG Machinery gene
  ACICHK_RS28240 (ACICHK_28240) rsmD 6321698..6322285 (+) 588 WP_406839052.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACICHK_RS28245 (ACICHK_28245) coaD 6322312..6322791 (+) 480 WP_192582606.1 pantetheine-phosphate adenylyltransferase -
  ACICHK_RS28250 (ACICHK_28250) - 6322891..6323961 (+) 1071 WP_406839053.1 cell division initiation protein -
  ACICHK_RS28255 (ACICHK_28255) - 6324136..6324780 (+) 645 WP_406839054.1 YceD family protein -
  ACICHK_RS28260 (ACICHK_28260) rpmF 6324783..6324956 (+) 174 WP_006139588.1 50S ribosomal protein L32 -
  ACICHK_RS28265 (ACICHK_28265) rnc 6324976..6325818 (+) 843 WP_151472142.1 ribonuclease III -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79732.22 Da        Isoelectric Point: 6.3713

>NTDB_id=964928 ACICHK_RS28235 WP_406839051.1 6319417..6321630(+) (recG) [Streptomyces sp. AHU1]
MDLVSVLEEPLKKALGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASSKA
PRGKGQRLEVTITDGSGRVQLVFFGNGVHKPHKDLLPGTRAMFSGKVSVFNRRLQLAHPAYELLRGEGDEAAESVDSWAG
ALIPIYPATAKLESWKIAKSVQTVLPSAQRAVDPLPDSLRDGRGLVPLPEALLKIHRPGTKADIHDARARLKWDEAFVLQ
VALARRRHADGQLPAVARTPAPDGLLTAFDARLPFTLTEGQRKVSKEIFDGLATEHPMHRLLQGEVGSGKTMVALRAMLA
VVDAGGQAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGAEHATKVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHAL
IEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVP
AADKPHFLTRAWERVREEVENGHQAYVVCPRIGDEEDDPKKGARKSPEDEAEKRPPLAVLDVADQLAKGPLQGLRVEVLH
GRMHPDDKDAVMRRFAAGETHVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSEMPEAS
PARQRLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIDDEEIIAEAREEATAVVAADPELGDLPGLRV
ALDALLDEEREQYLDKG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=964928 ACICHK_RS28235 WP_406839051.1 6319417..6321630(+) (recG) [Streptomyces sp. AHU1]
ATGGATCTCGTGTCCGTGCTCGAAGAACCACTGAAGAAGGCGCTCGGTCCCGCCACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACCGTCGGCGACCTGCTGCACCACTACCCCCGCAGATACGAGGAGCGCGGGCAGCTCACCCACCTCGCCG
ACCTGCCGATGGACGAGCACGTGACGGTGGTCGCCCAGGTCGCCGACGCCCGTCTGCACACCTTCGCCTCGTCGAAGGCG
CCCCGCGGCAAGGGCCAGCGCCTCGAAGTGACCATCACGGACGGCAGCGGCCGCGTCCAGCTGGTCTTCTTCGGCAACGG
CGTGCACAAGCCCCACAAGGACCTGCTGCCCGGCACCCGCGCGATGTTCTCCGGCAAGGTCTCCGTCTTCAACCGCCGCC
TCCAGCTGGCCCACCCGGCCTACGAACTGCTGCGCGGCGAGGGCGACGAGGCGGCGGAGAGCGTCGACAGCTGGGCGGGC
GCCCTCATCCCGATCTACCCGGCCACCGCCAAGCTGGAGTCCTGGAAGATCGCCAAGTCCGTGCAGACGGTGCTGCCGAG
CGCCCAGCGGGCGGTCGACCCCCTCCCGGACTCGCTGCGCGACGGCCGGGGCCTGGTCCCCCTGCCCGAGGCCCTCCTCA
AGATCCACCGCCCGGGCACCAAGGCCGACATCCACGACGCCCGCGCCCGCCTCAAGTGGGACGAGGCCTTCGTCCTCCAG
GTCGCCCTGGCCCGCCGCCGCCACGCCGACGGCCAGCTCCCGGCCGTCGCCCGGACCCCCGCCCCCGACGGCCTGCTGAC
CGCCTTCGACGCCAGACTGCCCTTCACCCTCACCGAGGGTCAGCGGAAGGTCTCCAAGGAGATCTTCGACGGCCTCGCCA
CCGAACACCCGATGCACCGTCTGCTCCAGGGAGAGGTGGGCTCCGGGAAGACGATGGTGGCCCTGCGCGCCATGCTCGCC
GTCGTCGACGCGGGCGGGCAGGCCGCGATGCTCGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGGTCGGTCACCGA
GATGATGGGCGAGCTGGCCGAGGGCGGCATGCTCGGCGGGGCCGAGCACGCGACGAAGGTCGTGCTGCTCACCGGCTCCA
TGGGGGCGGCCGCCCGCAGGCAGGCGCTGCTCGACCTGGTCACCGGCGAGGCCGGGATCGTGATCGGCACCCACGCGCTG
ATCGAGGACAAGGTCCAGTTCCACGACCTGGGCCTGGTCGTGGTCGACGAACAGCACCGCTTCGGCGTGGAACAGCGCGA
CGCCCTGCGCGGCAAGGGCAAGCAGCCCCCGCACCTCCTGGTCATGACCGCCACGCCCATCCCGCGCACGGTCGCGATGA
CGGTCTTCGGCGACCTGGAGACCTCCGTGCTCGACCAGCTCCCCGCCGGGCGCTCCCCGATCGCCAGCCACGTCGTCCCG
GCCGCGGACAAGCCGCACTTCCTCACGCGCGCGTGGGAGCGCGTGCGCGAGGAGGTGGAGAACGGCCATCAGGCGTACGT
CGTCTGCCCCCGCATCGGTGACGAGGAGGACGACCCGAAGAAGGGCGCCCGGAAGTCCCCGGAGGACGAGGCGGAGAAGC
GTCCGCCGCTGGCCGTCCTGGACGTCGCCGACCAGCTCGCCAAGGGGCCCCTCCAGGGCCTGCGGGTCGAAGTCCTGCAC
GGCAGGATGCATCCCGACGACAAGGACGCCGTCATGCGCCGCTTCGCGGCGGGCGAGACCCACGTCCTGGTCGCCACGAC
CGTGATCGAGGTCGGGGTGAACGTACCGAACGCCACCGCCATGGTGATCATGGACGCCGACCGCTTCGGCGTCTCCCAGC
TCCATCAGCTCCGCGGCCGGGTCGGCCGCGGTTCGGCGGCGGGGCTGTGCCTGCTGGTCTCCGAGATGCCGGAGGCGAGC
CCGGCGCGCCAGCGGCTGAACGCGGTGGCCTCGACCCTGGACGGCTTCGAGCTCTCCCGCATCGACCTCGAACAGCGCCG
CGAGGGCGACGTCCTCGGCCAGGCGCAGTCCGGTGTCCGCTCCTCGCTGCGCATGCTCGCCGTCATCGACGACGAGGAGA
TCATCGCGGAGGCCCGCGAGGAGGCCACCGCGGTCGTCGCGGCGGACCCGGAGCTCGGTGACCTGCCCGGCCTGCGCGTC
GCCCTGGACGCCCTGCTGGACGAGGAACGGGAGCAGTACCTGGACAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(549-624)

DEAD/DEAH box helicase (DEAD)

(281-451)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(652-712)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.968

94.708

0.369

Multiple sequence alignment