Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NSQ41_RS18375 Genome accession   NZ_CP150172
Coordinates   3809107..3809490 (-) Length   127 a.a.
NCBI ID   WP_311066645.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL K6-8210     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3802138..3819605 3809107..3809490 within 0


Gene organization within MGE regions


Location: 3802138..3819605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ41_RS18350 (NSQ41_18350) - 3802138..3802884 (-) 747 WP_339210624.1 YveK family protein -
  NSQ41_RS18355 (NSQ41_18355) - 3803048..3803182 (-) 135 WP_339210625.1 hypothetical protein -
  NSQ41_RS18360 (NSQ41_18360) - 3803558..3803701 (-) 144 WP_339210626.1 hypothetical protein -
  NSQ41_RS18365 (NSQ41_18365) - 3803879..3805492 (+) 1614 WP_339210627.1 SWIM zinc finger family protein -
  NSQ41_RS18370 (NSQ41_18370) - 3805542..3808289 (+) 2748 WP_339210629.1 DEAD/DEAH box helicase -
  NSQ41_RS18375 (NSQ41_18375) ssbB 3809107..3809490 (-) 384 WP_311066645.1 single-stranded DNA-binding protein Machinery gene
  NSQ41_RS18380 (NSQ41_18380) - 3809638..3810033 (-) 396 WP_339210630.1 hypothetical protein -
  NSQ41_RS18385 (NSQ41_18385) - 3810294..3810695 (+) 402 WP_339210631.1 helix-turn-helix transcriptional regulator -
  NSQ41_RS18390 (NSQ41_18390) - 3810769..3811227 (+) 459 WP_063388992.1 YwpF-like family protein -
  NSQ41_RS18395 (NSQ41_18395) - 3811412..3812692 (-) 1281 WP_094246128.1 RNA-guided endonuclease TnpB family protein -
  NSQ41_RS18400 (NSQ41_18400) tnpA 3812693..3813109 (-) 417 WP_339210633.1 IS200/IS605 family transposase -
  NSQ41_RS18405 (NSQ41_18405) - 3813281..3813553 (-) 273 WP_339210635.1 hypothetical protein -
  NSQ41_RS18410 (NSQ41_18410) fabZ 3814032..3814454 (-) 423 WP_094244697.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NSQ41_RS18415 (NSQ41_18415) - 3814654..3814920 (-) 267 WP_094244698.1 DNA-directed RNA polymerase subunit beta -
  NSQ41_RS18420 (NSQ41_18420) - 3815111..3815941 (-) 831 WP_066248024.1 flagellar hook-basal body protein -
  NSQ41_RS18425 (NSQ41_18425) - 3815958..3816776 (-) 819 WP_339197992.1 flagellar hook-basal body protein -
  NSQ41_RS18430 (NSQ41_18430) - 3817705..3818706 (-) 1002 WP_063388998.1 rod shape-determining protein -
  NSQ41_RS18435 (NSQ41_18435) spoIIID 3818851..3819126 (-) 276 WP_063388999.1 sporulation transcriptional regulator SpoIIID -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14228.00 Da        Isoelectric Point: 7.8527

>NTDB_id=964806 NSQ41_RS18375 WP_311066645.1 3809107..3809490(-) (ssbB) [Aeribacillus sp. FSL K6-8210]
MINHVTLVGRLTKDPEIRYTSEGAPVANITLAVSRNFRNAAGEIDTDFVHCTLWRRTAENTANYCRKGSIVGVIGRIQTR
NYENSEGKKVYVTEVVADSVRFMGTPPQRIRARELFDPESAPEQSEA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=964806 NSQ41_RS18375 WP_311066645.1 3809107..3809490(-) (ssbB) [Aeribacillus sp. FSL K6-8210]
GTGATCAACCATGTGACGCTCGTCGGTCGATTAACGAAAGATCCTGAAATCCGCTATACAAGTGAAGGGGCTCCTGTTGC
CAATATTACGCTGGCTGTGAGCCGCAACTTTCGCAATGCGGCAGGGGAAATCGACACAGATTTTGTTCATTGTACACTTT
GGAGACGAACAGCTGAAAATACTGCAAATTACTGCCGGAAAGGATCGATCGTTGGCGTAATCGGAAGAATTCAAACGCGA
AACTATGAAAACAGCGAGGGCAAAAAAGTGTACGTAACAGAAGTTGTTGCGGATTCCGTTCGATTTATGGGCACTCCGCC
GCAAAGAATACGGGCAAGAGAGCTTTTCGATCCGGAATCCGCACCTGAACAGTCTGAGGCATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

70.37

85.039

0.598
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.136

81.102

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

57.282

81.102

0.465
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.119

85.827

0.37

Multiple sequence alignment