Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NYE79_RS08580 Genome accession   NZ_CP150168
Coordinates   1742807..1744774 (-) Length   655 a.a.
NCBI ID   WP_053091386.1    Uniprot ID   A0A2J9EVW2
Organism   Streptococcus sp. FSL W8-0197     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1737807..1749774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS08565 (NYE79_08565) cps4B 1738328..1739059 (-) 732 WP_339293685.1 capsular polysaccharide biosynthesis protein Cps4B -
  NYE79_RS08570 (NYE79_08570) - 1739061..1740506 (-) 1446 WP_084881491.1 LCP family protein -
  NYE79_RS08575 (NYE79_08575) amiA3 1740698..1742659 (-) 1962 WP_216728558.1 peptide ABC transporter substrate-binding protein Regulator
  NYE79_RS08580 (NYE79_08580) amiA 1742807..1744774 (-) 1968 WP_053091386.1 peptide ABC transporter substrate-binding protein Regulator
  NYE79_RS08585 (NYE79_08585) - 1744944..1746554 (-) 1611 WP_001156794.1 alpha-glucosidase -
  NYE79_RS08590 (NYE79_08590) - 1746707..1748191 (+) 1485 WP_216728559.1 DUF1846 domain-containing protein -
  NYE79_RS08595 (NYE79_08595) - 1748325..1749356 (-) 1032 WP_095726269.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72466.94 Da        Isoelectric Point: 5.0129

>NTDB_id=964629 NYE79_RS08580 WP_053091386.1 1742807..1744774(-) (amiA) [Streptococcus sp. FSL W8-0197]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVSGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKL
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGIKRGQDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=964629 NYE79_RS08580 WP_053091386.1 1742807..1744774(-) (amiA) [Streptococcus sp. FSL W8-0197]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCTCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAAGCGGATGCTCCCAAAACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGACTATAGTGTGACGAGCA
AGAGCTCAACCTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGACAAGTATGGGAACTTAATTCCATCA
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTTAAGGCCAAAGACTTTGTTACTGGGCTTAAACATGCTGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATGTTAGTGGTGAGAGCAATGATTTCTCTACCGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAACTCTAAGGTCACAACTGC
AACCATGCTTCCAGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACCCCATCAGGTATCCTAT
ATAATGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTCAAGATTGACAATATTAAACTAACTTTCTACGATGGATCAGACCAAGAATCCTTGATTCGTAGCTTTACACA
AGGTGCCTATACAACAGCCCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAACAAGAGTACGGCGATAAGATTG
TTTACAGTCCACAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTATAATAAAACAGCTAAAACA
GACGAAGCTCAAAAAACATCAACGAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCGCTGAACTTTGCCCTTGATCG
TCATTCTTATACTGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCACATGACTACG
TTCAAGTGGGTGAAAAAACCTTTGGAGAGTTGGCGCAGGCAGAGCTCGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCAGCCTTTGCTAAAGCCAAGGAAGAATTGCAAGC
CAAGGGTGTTACCTTCCCAATCCATTTGGATATCCCGGTTGAACAAACAGATGTAATCGCGGTTCAACAAACTAACTCAC
TCAAGCAGTCTATCGAATCATCACTTGGTACTGAAAATGTCATTGTCGATGTCCTTCAAATGACCGATAATGAGAAATTG
AGCATTACATCTCAAGCCAAGGTTCCATCCCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACCTCAACATTCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGGATTAAGCGCGGACAAGATC
CAGAAGTGATGGCTCAAGTTGGACTGGACGAATACAAGAAACTCTTGGATGATGCTGCAGCTGAAACCAGCGACCTTAAC
AAGCGTTATGAAAAATACGCTAAAGCTCAAGCCTGGGTGTCAGACAGCTCGCTCTTAATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACGGTTAGCCGTACTGTACCATTCACAAAAGCTTATTCTCAAGTTGGGATCAAGGGAGACCCGTTTGTGTTCA
AAGGATTGGAGTTGCAAAATGACGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATT
GAGACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J9EVW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.471

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

54.173

100

0.545
  amiA3 Streptococcus thermophilus LMG 18311

53.718

100

0.54

Multiple sequence alignment