Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   NYE79_RS08575 Genome accession   NZ_CP150168
Coordinates   1740698..1742659 (-) Length   653 a.a.
NCBI ID   WP_216728558.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1735698..1747659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS08555 (NYE79_08555) - 1736925..1737617 (-) 693 WP_061588742.1 tyrosine-protein kinase -
  NYE79_RS08560 (NYE79_08560) cpsC 1737627..1738319 (-) 693 WP_000664126.1 capsular polysaccharide biosynthesis protein CpsC -
  NYE79_RS08565 (NYE79_08565) cps4B 1738328..1739059 (-) 732 WP_339293685.1 capsular polysaccharide biosynthesis protein Cps4B -
  NYE79_RS08570 (NYE79_08570) - 1739061..1740506 (-) 1446 WP_084881491.1 LCP family protein -
  NYE79_RS08575 (NYE79_08575) amiA3 1740698..1742659 (-) 1962 WP_216728558.1 peptide ABC transporter substrate-binding protein Regulator
  NYE79_RS08580 (NYE79_08580) amiA 1742807..1744774 (-) 1968 WP_053091386.1 peptide ABC transporter substrate-binding protein Regulator
  NYE79_RS08585 (NYE79_08585) - 1744944..1746554 (-) 1611 WP_001156794.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 73115.35 Da        Isoelectric Point: 4.8375

>NTDB_id=964628 NYE79_RS08575 WP_216728558.1 1740698..1742659(-) (amiA3) [Streptococcus sp. FSL W8-0197]
MIKMKKRLIGTGLVLATGILLSACGQSNTDTSTYSSTFSANPTTFNYLLDYYADNTAVITNLVDGLLENDSYGNLVPAVA
EDWSVSSDGLTYTYKLRKDAKWYTADGEEYASVKAQDFVTGIKYAADNKGQAMDLIQNSIKGLNDYVTGATNDFTTVGVK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKEFGTLTPNSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFESGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKTYNHTAKTTD
EQKKSAQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNKEKAQARFAEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYLKIFGLDAKEDQELIKSLGLDTYTQLLKEADAENKDVTKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKAKWEEESKKA
IEKSQKEFENHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=964628 NYE79_RS08575 WP_216728558.1 1740698..1742659(-) (amiA3) [Streptococcus sp. FSL W8-0197]
ATGATCAAAATGAAAAAAAGACTAATCGGGACAGGTCTTGTATTAGCGACAGGGATTTTGCTCTCTGCATGTGGACAGTC
CAATACAGATACTAGCACTTATTCATCAACATTTAGTGCGAATCCAACAACTTTTAACTATCTCCTAGATTATTATGCAG
ATAACACTGCCGTTATTACCAATCTCGTAGATGGTTTGTTAGAAAATGACAGCTATGGGAACCTCGTACCTGCTGTTGCG
GAGGATTGGTCTGTTTCATCAGATGGTTTGACCTATACCTACAAGCTTAGAAAAGATGCCAAGTGGTATACGGCTGATGG
TGAGGAATACGCTTCAGTTAAAGCTCAGGATTTTGTCACTGGGATCAAATATGCCGCGGACAACAAGGGTCAAGCCATGG
ATCTCATCCAAAACTCTATCAAGGGATTGAATGACTATGTGACAGGCGCGACCAATGACTTCACAACAGTTGGTGTGAAA
GCCTTGGATGACTATACGGTTGAGTACACTTTGACTCGACCAGAGCCATACTGGAACTCAAAGACAACCAATAGTATCCT
TTTCCCGGTTAACGAAGAGTTTTTGAAATCAAAGGATAAAGAATTTGGAACCTTGACGCCAAACAGCATCCTTTACAATG
GACCTTACTTGTTAAAAGATTTTACATCAAAATCTTCAATCGAGTATGTGAAGAATCCACACTATTATGACCATGATAAA
GTAACCATTGAAAAAGTTAAGTTAGCTTACTTTGATGGCTCTGATCAGGAGATGACCATTCGAAACTTTGAAAGTGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCGAACTATGCTAAGACAAAAGAAAAATACCAAGACAATATCGTCTATA
GTTTACAAGACAAGACATCTTGGTACTTTAACTTTAACGTCAACCGTAAAACCTATAATCATACCGCTAAAACAACGGAT
GAACAAAAGAAATCAGCTCAAACAGCTATCTTAAATAAAAATTTCCGTCAAGCTATCAACTTTGGTATTGATCGAACAGC
CTACTCTGCTCAATCTAACGGTGAAGAAGCAGCGAGCAAAACCCTTCGTAATACTCTAGTTCCTCCAACATTTGTCCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACAGCTTCTAAGCTTGTGAACTACGGAACTGAGTGGTCAGGTATCAATTTGGCA
GATGCTCAAGATGCCTACTTTAACAAGGAAAAGGCCCAAGCAAGATTTGCGGAAGCTAAAAAGGAATTGGAAGCCCAAGG
CGTGACTTTCCCAATCCATTTGGATGTCCCTGTTGATCAGACGAATAAAAATGCGGTTTCTGGTATGAACTCGGTTAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGATGTTCAACAGCTTTCTACAGATGACTTTGGGAATGTT
GCCTTCTTAGCACCAAATCCAGCAGCTCGTGACTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTATCTAGACCCCTTCAATGCTGAAACAGGCTTCTATCTCAAGATTTTTGGTCTTGATGCCAAGGAAGACCAAGAGC
TCATTAAGAGTTTGGGGCTCGATACCTATACACAACTCCTGAAAGAAGCAGATGCTGAGAATAAAGATGTCACTAAGCGT
TATGAAAAATACGCTGAAGCTCAAGCTTGGATGATTGACAATTCTCTAGTTATGTCTGCTATGTCAAATGGTGGTACAGC
CTCTGTAACCAAAGTAACTCCGTTTACACGTGCCTACTCCCTAGTGGGAATCAAGGGTGACGGAAATAATTATAAGTACA
TGAGATTACAAAAAGACCCTGTTACCAAGAAACAATTTGATGAAGCCAAGGCTAAGTGGGAAGAAGAAAGTAAAAAAGCT
ATCGAAAAGAGCCAAAAAGAGTTTGAAAACCACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.294

100

0.516
  amiA3 Streptococcus thermophilus LMG 18311

51.142

100

0.515
  amiA Streptococcus salivarius strain HSISS4

50.61

100

0.508

Multiple sequence alignment