Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   NYE79_RS02810 Genome accession   NZ_CP150168
Coordinates   525004..525663 (-) Length   219 a.a.
NCBI ID   WP_339293777.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520004..530663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS02780 (NYE79_02780) - 520131..520697 (+) 567 WP_000601909.1 aminodeoxychorismate/anthranilate synthase component II -
  NYE79_RS02785 (NYE79_02785) trpD 520708..521712 (+) 1005 WP_261034752.1 anthranilate phosphoribosyltransferase -
  NYE79_RS02790 (NYE79_02790) trpC 521709..522476 (+) 768 WP_020903545.1 indole-3-glycerol phosphate synthase TrpC -
  NYE79_RS02795 (NYE79_02795) - 522463..523062 (+) 600 WP_339293774.1 phosphoribosylanthranilate isomerase -
  NYE79_RS02800 (NYE79_02800) trpB 523040..524263 (+) 1224 WP_339293775.1 tryptophan synthase subunit beta -
  NYE79_RS02805 (NYE79_02805) trpA 524256..525032 (+) 777 WP_339293776.1 tryptophan synthase subunit alpha -
  NYE79_RS02810 (NYE79_02810) cclA/cilC 525004..525663 (-) 660 WP_339293777.1 prepilin peptidase Machinery gene
  NYE79_RS02815 (NYE79_02815) - 525733..526188 (+) 456 WP_261100093.1 GNAT family N-acetyltransferase -
  NYE79_RS02820 (NYE79_02820) - 526236..527381 (-) 1146 WP_339293778.1 low temperature requirement protein A -
  NYE79_RS02825 (NYE79_02825) - 528135..529424 (+) 1290 WP_049519709.1 membrane protein -
  NYE79_RS02830 (NYE79_02830) - 529434..530522 (+) 1089 WP_004193676.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24780.01 Da        Isoelectric Point: 7.6430

>NTDB_id=964600 NYE79_RS02810 WP_339293777.1 525004..525663(-) (cclA/cilC) [Streptococcus sp. FSL W8-0197]
MIDFYFFLVGSILASFLGLVIDRFPEQSIILPASHCDACQTRLHPLDLIPILSQVFNRFRCRYCKAPYPVWYALLELGLG
LLFLVWSWGFLSLGQVILITAGLTLGIYDFRHQEYPLLVWLTFHLILMAFSGWNLVMVLFLVLGIVAHFIDIRMGAGDFL
FLASCAIVFSATELLILIQFASATGILAFLLQKKKERLPFVPFLLLATCVIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=964600 NYE79_RS02810 WP_339293777.1 525004..525663(-) (cclA/cilC) [Streptococcus sp. FSL W8-0197]
ATGATTGATTTTTATTTTTTTCTTGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTCATTGACCGTTTTCCAGAGCA
ATCCATTATCCTACCAGCTAGCCACTGCGATGCCTGTCAGACTCGCTTGCATCCCTTAGATTTGATTCCGATTCTCTCGC
AGGTCTTCAATCGCTTTCGCTGTCGCTACTGCAAGGCTCCTTATCCAGTCTGGTATGCCCTTCTTGAACTAGGTTTAGGT
CTCCTTTTTCTGGTTTGGTCTTGGGGATTTCTTTCCTTGGGGCAAGTCATCCTAATCACTGCTGGTTTGACTCTGGGCAT
CTACGACTTCCGTCATCAGGAATATCCCTTACTAGTCTGGCTGACTTTTCACCTAATCCTCATGGCTTTCTCTGGCTGGA
ATCTAGTCATGGTCCTCTTCCTTGTCCTTGGAATTGTGGCTCATTTTATCGATATCCGCATGGGCGCAGGGGATTTTCTC
TTTTTAGCTTCTTGTGCTATCGTCTTTAGCGCAACGGAGTTACTTATCTTGATTCAGTTTGCTTCTGCAACAGGAATTCT
AGCCTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTACTTGTGTGATTATTTTTG
GTAAGCTACTGCTTGTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

94.064

100

0.941
  cclA/cilC Streptococcus pneumoniae Rx1

89.954

100

0.9
  cclA/cilC Streptococcus pneumoniae D39

89.954

100

0.9
  cclA/cilC Streptococcus pneumoniae R6

89.954

100

0.9
  cclA/cilC Streptococcus pneumoniae TIGR4

89.041

100

0.89
  cclA/cilC Streptococcus mitis NCTC 12261

88.128

100

0.881

Multiple sequence alignment