Detailed information NTG0096452

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: AAA995_RS01410
• Genome accession: NZ_AP028877
• Coordinates: 247179..248177 (+)
• Length: 332 a.a.
• NCBI ID: WP_001810210.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 21P20
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 242179..253177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAA995_RS01390 (SP21P20_02690)	leuS	242485..244986 (+)	2502	WP_000011786.1	leucine--tRNA ligase	-
AAA995_RS01395 (SP21P20_02700)	-	245181..245876 (+)	696	WP_001144906.1	GNAT family protein	-
AAA995_RS01400 (SP21P20_02710)	-	245888..246304 (+)	417	WP_000628395.1	GNAT family N-acetyltransferase	-
AAA995_RS01405	-	246953..247045 (-)	93	WP_000970381.1	type I toxin-antitoxin system Fst family toxin	-
AAA995_RS01410 (SP21P20_02720)	ruvB	247179..248177 (+)	999	WP_001810210.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
AAA995_RS01415 (SP21P20_02730)	-	248158..248730 (+)	573	Protein_275	nucleotidyltransferase family protein	-
AAA995_RS01420 (SP21P20_02740)	-	248961..249719 (+)	759	WP_000466719.1	isoprenyl transferase	-
AAA995_RS01425 (SP21P20_02750)	-	249728..250531 (+)	804	WP_000189857.1	phosphatidate cytidylyltransferase	-
AAA995_RS01430 (SP21P20_02760)	eeP	250553..251812 (+)	1260	WP_000900660.1	RIP metalloprotease RseP	Regulator

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37258.70 Da
• Isoelectric Point: 4.5053

>NTDB_id=96452 AAA995_RS01410 WP_001810210.1 247179..248177(+) (ruvB) [Streptococcus pneumoniae strain 21P20]
MGRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DIITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=96452 AAA995_RS01410 WP_001810210.1 247179..248177(+) (ruvB) [Streptococcus pneumoniae strain 21P20]
ATGGGTAGAATTTTAGATAATGAGATAATGGGGGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATCGGACAGGATAAGGTCAAGGACCAGCTACAAATCTTTATTGAAGCTGCAAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGGCCTCCAGGTCTCGGGAAAACGACCATGGCCTTTGTTATTGCCAACGAACTGGGAGTCAATCTT
AAGCAGACGTCGGGTCCAGTCATTGAAAAAGCCGGAGATCTGGTAGCTATTTTGAATGAGTTAGAGCCTGGGGATGTCCT
TTTTATTGATGAGATCCATCGTTTGCCAATGTCAGTGGAAGAGGTGCTTTATAGTGCTATGGAGGACTTCTACATAGATA
TTATGATTGGGGCTGGTGAAGGCAGTCGCAGTGTTCATTTGGAGTTGCCTCCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCAAATCCACTACGGGCACGTTTTGGGATTACAGGTCATATGGAGTATTATGCCCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGAACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATCGAT
GATATTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
TACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTCAATATCGCCGAAGAGCGTGAGACAG
TTGAAGACATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	99.699	100	0.997
ruvB	Streptococcus pneumoniae D39	99.699	100	0.997
ruvB	Streptococcus pneumoniae TIGR4	98.795	100	0.988
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47