Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSU02_RS19575 Genome accession   NZ_CP150165
Coordinates   4071035..4071532 (-) Length   165 a.a.
NCBI ID   WP_094244812.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL W8-0870     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4066035..4076532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU02_RS19555 (NSU02_19555) rplI 4067245..4067691 (-) 447 WP_063387764.1 50S ribosomal protein L9 -
  NSU02_RS19560 (NSU02_19560) - 4067688..4069664 (-) 1977 WP_063387763.1 DHH family phosphoesterase -
  NSU02_RS19565 (NSU02_19565) - 4069701..4070627 (-) 927 WP_066251762.1 YybS family protein -
  NSU02_RS19570 (NSU02_19570) rpsR 4070754..4070990 (-) 237 WP_044748995.1 30S ribosomal protein S18 -
  NSU02_RS19575 (NSU02_19575) ssbA 4071035..4071532 (-) 498 WP_094244812.1 single-stranded DNA-binding protein Machinery gene
  NSU02_RS19580 (NSU02_19580) rpsF 4071599..4071886 (-) 288 WP_311066707.1 30S ribosomal protein S6 -
  NSU02_RS19585 (NSU02_19585) ychF 4071990..4073087 (-) 1098 WP_063387759.1 redox-regulated ATPase YchF -
  NSU02_RS19590 (NSU02_19590) - 4073236..4073442 (-) 207 WP_063387758.1 DUF951 domain-containing protein -
  NSU02_RS19595 (NSU02_19595) yyaC 4073693..4074310 (+) 618 WP_063387757.1 spore protease YyaC -
  NSU02_RS19600 (NSU02_19600) - 4074324..4075178 (-) 855 WP_063387756.1 ParB/RepB/Spo0J family partition protein -
  NSU02_RS19605 (NSU02_19605) - 4075171..4075932 (-) 762 WP_063387755.1 AAA family ATPase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18259.01 Da        Isoelectric Point: 4.6115

>NTDB_id=964492 NSU02_RS19575 WP_094244812.1 4071035..4071532(-) (ssbA) [Aeribacillus sp. FSL W8-0870]
MMNRVVLVGRLTRDPELRYTPSGVAVATFTLAVNRNFTNQQGEREADFINCVVWRRPAENVANYLKKGSLAGVDGRLQTR
SYEDQTGRRVFVTEVVADSVQFLEPKSAAAGNNTGFFAGNQGNANPYGSAPFDPNRNNQNHQNFDDDPFANDGQPIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=964492 NSU02_RS19575 WP_094244812.1 4071035..4071532(-) (ssbA) [Aeribacillus sp. FSL W8-0870]
ATGATGAATCGTGTCGTTTTGGTCGGTCGGCTTACAAGAGATCCCGAATTACGATATACGCCTAGCGGTGTAGCCGTTGC
AACCTTTACATTGGCAGTTAATCGGAATTTTACAAATCAACAAGGGGAACGCGAAGCAGATTTTATCAACTGTGTCGTTT
GGCGTCGTCCTGCGGAAAACGTAGCCAATTATTTAAAGAAAGGCAGCCTTGCAGGTGTTGATGGCCGTCTTCAAACACGC
AGCTATGAAGATCAAACGGGAAGACGAGTATTCGTAACAGAGGTTGTGGCGGACAGCGTTCAATTTTTAGAACCGAAGAG
TGCTGCAGCCGGGAATAATACGGGATTTTTTGCAGGAAATCAAGGAAATGCAAATCCATATGGCAGTGCACCATTTGATC
CAAACCGGAATAATCAGAACCACCAAAACTTTGACGACGATCCATTTGCTAATGATGGACAACCAATTGATATTTCAGAT
GATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.54

100

0.733
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.588
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.242

0.406
  ssb Glaesserella parasuis strain SC1401

34.239

100

0.382

Multiple sequence alignment