Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NSQ12_RS12675 Genome accession   NZ_CP150160
Coordinates   2465570..2466001 (-) Length   143 a.a.
NCBI ID   WP_029726720.1    Uniprot ID   -
Organism   Bacillus sp. PS95     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2460570..2471001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ12_RS12625 (NSQ12_12625) sinI 2460764..2460937 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  NSQ12_RS12630 (NSQ12_12630) sinR 2460971..2461306 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NSQ12_RS12635 (NSQ12_12635) tasA 2461399..2462184 (-) 786 WP_015714250.1 biofilm matrix protein TasA -
  NSQ12_RS12640 (NSQ12_12640) - 2462248..2462820 (-) 573 WP_003230181.1 signal peptidase I -
  NSQ12_RS12645 (NSQ12_12645) tapA 2462804..2463565 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ12_RS12650 (NSQ12_12650) - 2463837..2464163 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NSQ12_RS12655 (NSQ12_12655) - 2464205..2464384 (-) 180 WP_072175549.1 YqzE family protein -
  NSQ12_RS12660 (NSQ12_12660) comGG 2464455..2464829 (-) 375 WP_167408283.1 ComG operon protein ComGG Machinery gene
  NSQ12_RS12665 (NSQ12_12665) comGF 2464830..2465213 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  NSQ12_RS12670 (NSQ12_12670) comGE 2465239..2465586 (-) 348 WP_167408284.1 ComG operon protein 5 Machinery gene
  NSQ12_RS12675 (NSQ12_12675) comGD 2465570..2466001 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  NSQ12_RS12680 (NSQ12_12680) comGC 2465991..2466287 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene
  NSQ12_RS12685 (NSQ12_12685) comGB 2466301..2467338 (-) 1038 WP_339174855.1 comG operon protein ComGB Machinery gene
  NSQ12_RS12690 (NSQ12_12690) comGA 2467325..2468395 (-) 1071 WP_069322755.1 competence protein ComGA Machinery gene
  NSQ12_RS12695 (NSQ12_12695) - 2468657..2468806 (-) 150 WP_250540178.1 hypothetical protein -
  NSQ12_RS12700 (NSQ12_12700) corA 2468808..2469761 (-) 954 WP_339174859.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16151.72 Da        Isoelectric Point: 9.9080

>NTDB_id=964074 NSQ12_RS12675 WP_029726720.1 2465570..2466001(-) (comGD) [Bacillus sp. PS95]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQVAISRQQRTKIFFHKKEYQLV
IGDTVIERPYARGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=964074 NSQ12_RS12675 WP_029726720.1 2465570..2466001(-) (comGD) [Bacillus sp. PS95]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGGTTGCTATTTCCCGTCAACAAAGAACAAAAATTTTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAAGGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTATATGATATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

95.804

100

0.958

Multiple sequence alignment