Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NSQ12_RS12630 | Genome accession | NZ_CP150160 |
| Coordinates | 2460971..2461306 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus sp. PS95 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2455971..2466306
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ12_RS12610 (NSQ12_12610) | gcvT | 2456563..2457651 (-) | 1089 | WP_213379484.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NSQ12_RS12615 (NSQ12_12615) | - | 2458093..2459766 (+) | 1674 | WP_213379486.1 | SNF2-related protein | - |
| NSQ12_RS12620 (NSQ12_12620) | - | 2459787..2460581 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| NSQ12_RS12625 (NSQ12_12625) | sinI | 2460764..2460937 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| NSQ12_RS12630 (NSQ12_12630) | sinR | 2460971..2461306 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| NSQ12_RS12635 (NSQ12_12635) | tasA | 2461399..2462184 (-) | 786 | WP_015714250.1 | biofilm matrix protein TasA | - |
| NSQ12_RS12640 (NSQ12_12640) | - | 2462248..2462820 (-) | 573 | WP_003230181.1 | signal peptidase I | - |
| NSQ12_RS12645 (NSQ12_12645) | tapA | 2462804..2463565 (-) | 762 | WP_003230180.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NSQ12_RS12650 (NSQ12_12650) | - | 2463837..2464163 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| NSQ12_RS12655 (NSQ12_12655) | - | 2464205..2464384 (-) | 180 | WP_072175549.1 | YqzE family protein | - |
| NSQ12_RS12660 (NSQ12_12660) | comGG | 2464455..2464829 (-) | 375 | WP_167408283.1 | ComG operon protein ComGG | Machinery gene |
| NSQ12_RS12665 (NSQ12_12665) | comGF | 2464830..2465213 (-) | 384 | WP_032726158.1 | ComG operon protein ComGF | Machinery gene |
| NSQ12_RS12670 (NSQ12_12670) | comGE | 2465239..2465586 (-) | 348 | WP_167408284.1 | ComG operon protein 5 | Machinery gene |
| NSQ12_RS12675 (NSQ12_12675) | comGD | 2465570..2466001 (-) | 432 | WP_029726720.1 | comG operon protein ComGD | Machinery gene |
| NSQ12_RS12680 (NSQ12_12680) | comGC | 2465991..2466287 (-) | 297 | WP_029726719.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=964070 NSQ12_RS12630 WP_003226345.1 2460971..2461306(+) (sinR) [Bacillus sp. PS95]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=964070 NSQ12_RS12630 WP_003226345.1 2460971..2461306(+) (sinR) [Bacillus sp. PS95]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |