Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NST79_RS21360 Genome accession   NZ_CP150159
Coordinates   4118352..4118870 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus sp. PS196     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4113352..4123870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST79_RS21330 (NST79_21330) - 4113855..4115210 (+) 1356 WP_041337895.1 MFS transporter -
  NST79_RS21335 (NST79_21335) - 4115244..4115798 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  NST79_RS21340 (NST79_21340) - 4115816..4116196 (-) 381 WP_048654831.1 VOC family protein -
  NST79_RS21345 (NST79_21345) ccpB 4116252..4117187 (-) 936 WP_212060061.1 LacI family DNA-binding transcriptional regulator -
  NST79_RS21350 (NST79_21350) xth 4117247..4118005 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  NST79_RS21355 (NST79_21355) rpsR 4118069..4118308 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  NST79_RS21360 (NST79_21360) ssbA 4118352..4118870 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  NST79_RS21365 (NST79_21365) rpsF 4118911..4119198 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  NST79_RS21370 (NST79_21370) ychF 4119309..4120409 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  NST79_RS21375 (NST79_21375) - 4120536..4122539 (-) 2004 WP_212060063.1 molybdopterin-dependent oxidoreductase -
  NST79_RS21380 (NST79_21380) - 4122590..4122796 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=964027 NST79_RS21360 WP_003219228.1 4118352..4118870(-) (ssbA) [Bacillus sp. PS196]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=964027 NST79_RS21360 WP_003219228.1 4118352..4118870(-) (ssbA) [Bacillus sp. PS196]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378