Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | NSQ16_RS21525 | Genome accession | NZ_CP150155 |
| Coordinates | 4128968..4129486 (-) | Length | 172 a.a. |
| NCBI ID | WP_003219228.1 | Uniprot ID | A0A063XE16 |
| Organism | Bacillus sp. PS108 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4081050..4128953 | 4128968..4129486 | flank | 15 |
Gene organization within MGE regions
Location: 4081050..4129486
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ16_RS21220 (NSQ16_21220) | - | 4081465..4082775 (+) | 1311 | WP_014478548.1 | MFS transporter | - |
| NSQ16_RS21225 (NSQ16_21225) | - | 4082936..4083673 (+) | 738 | WP_032676932.1 | MerR family transcriptional regulator | - |
| NSQ16_RS21230 (NSQ16_21230) | - | 4083711..4084499 (-) | 789 | WP_032676931.1 | hypothetical protein | - |
| NSQ16_RS21235 (NSQ16_21235) | - | 4084567..4084956 (-) | 390 | WP_029726106.1 | nuclear transport factor 2 family protein | - |
| NSQ16_RS21240 (NSQ16_21240) | - | 4085102..4085941 (+) | 840 | WP_003226887.1 | pentapeptide repeat-containing protein | - |
| NSQ16_RS21245 (NSQ16_21245) | - | 4085974..4087188 (-) | 1215 | WP_003226885.1 | MFS transporter | - |
| NSQ16_RS21250 (NSQ16_21250) | - | 4087376..4088254 (+) | 879 | WP_003226883.1 | LysR family transcriptional regulator | - |
| NSQ16_RS21255 (NSQ16_21255) | - | 4088268..4088711 (+) | 444 | WP_003226881.1 | GNAT family N-acetyltransferase | - |
| NSQ16_RS21260 (NSQ16_21260) | - | 4088794..4089273 (+) | 480 | WP_003226879.1 | hypothetical protein | - |
| NSQ16_RS21265 (NSQ16_21265) | - | 4089298..4089431 (-) | 134 | Protein_4131 | LysR family transcriptional regulator | - |
| NSQ16_RS21270 (NSQ16_21270) | - | 4089448..4090110 (-) | 663 | WP_003226877.1 | MBL fold metallo-hydrolase | - |
| NSQ16_RS21275 (NSQ16_21275) | - | 4090257..4090709 (-) | 453 | WP_003226875.1 | MarR family transcriptional regulator | - |
| NSQ16_RS21280 (NSQ16_21280) | - | 4090829..4091275 (+) | 447 | WP_003226873.1 | GNAT family N-acetyltransferase | - |
| NSQ16_RS21285 (NSQ16_21285) | - | 4091272..4091874 (+) | 603 | WP_003226872.1 | YitT family protein | - |
| NSQ16_RS21290 (NSQ16_21290) | satA | 4091942..4092463 (-) | 522 | WP_085185293.1 | streptothricin N-acetyltransferase SatA | - |
| NSQ16_RS21295 (NSQ16_21295) | - | 4092846..4093202 (+) | 357 | WP_029726097.1 | MmcQ/YjbR family DNA-binding protein | - |
| NSQ16_RS21300 (NSQ16_21300) | - | 4093361..4093927 (+) | 567 | WP_085185291.1 | dihydrofolate reductase family protein | - |
| NSQ16_RS21305 (NSQ16_21305) | - | 4094170..4094331 (+) | 162 | WP_085185289.1 | DUF255 domain-containing protein | - |
| NSQ16_RS21310 (NSQ16_21310) | tet(L) | 4094434..4095810 (-) | 1377 | WP_085185287.1 | tetracycline efflux MFS transporter Tet(L) | - |
| NSQ16_RS21315 (NSQ16_21315) | - | 4096160..4096399 (+) | 240 | WP_003243894.1 | DUF255 domain-containing protein | - |
| NSQ16_RS21320 (NSQ16_21320) | - | 4096549..4096965 (+) | 417 | WP_010886646.1 | MerR family transcriptional regulator | - |
| NSQ16_RS21325 (NSQ16_21325) | - | 4096962..4097879 (+) | 918 | WP_085185285.1 | EamA family transporter | - |
| NSQ16_RS21330 (NSQ16_21330) | - | 4097951..4098121 (+) | 171 | Protein_4144 | DUF255 domain-containing protein | - |
| NSQ16_RS21335 (NSQ16_21335) | - | 4098207..4099718 (+) | 1512 | WP_339232481.1 | recombinase family protein | - |
| NSQ16_RS21340 (NSQ16_21340) | - | 4099751..4100119 (-) | 369 | WP_144486887.1 | hypothetical protein | - |
| NSQ16_RS21345 (NSQ16_21345) | - | 4100349..4100729 (-) | 381 | WP_088679614.1 | cystatin-like fold lipoprotein | - |
| NSQ16_RS21350 (NSQ16_21350) | - | 4100792..4101298 (-) | 507 | WP_088679578.1 | hypothetical protein | - |
| NSQ16_RS21355 (NSQ16_21355) | - | 4101313..4102302 (-) | 990 | WP_339232484.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| NSQ16_RS21360 (NSQ16_21360) | conG | 4102299..4104746 (-) | 2448 | WP_339232487.1 | transposon conjugation system subunit ConG | - |
| NSQ16_RS21365 (NSQ16_21365) | - | 4104750..4105076 (-) | 327 | WP_033881975.1 | YddF family protein | - |
| NSQ16_RS21370 (NSQ16_21370) | conE | 4105094..4107589 (-) | 2496 | WP_339232489.1 | VirB4-like ATPase ConE | - |
| NSQ16_RS21375 (NSQ16_21375) | - | 4107477..4108001 (-) | 525 | WP_041516320.1 | conjugal transfer protein | - |
| NSQ16_RS21380 (NSQ16_21380) | conC | 4108014..4108262 (-) | 249 | WP_339232491.1 | transposon conjugation system subunit ConC | - |
| NSQ16_RS21385 (NSQ16_21385) | - | 4108274..4109338 (-) | 1065 | WP_339232492.1 | conjugal transfer protein | - |
| NSQ16_RS21390 (NSQ16_21390) | - | 4109366..4109515 (-) | 150 | WP_003328171.1 | hypothetical protein | - |
| NSQ16_RS21395 (NSQ16_21395) | - | 4109533..4109811 (-) | 279 | WP_080624166.1 | hypothetical protein | - |
| NSQ16_RS21400 (NSQ16_21400) | - | 4109824..4110141 (-) | 318 | WP_339232494.1 | hypothetical protein | - |
| NSQ16_RS21405 (NSQ16_21405) | - | 4110153..4110419 (-) | 267 | WP_339232496.1 | hypothetical protein | - |
| NSQ16_RS21410 (NSQ16_21410) | nicK | 4110686..4111744 (-) | 1059 | WP_339232497.1 | DNA relaxase NicK | - |
| NSQ16_RS21415 (NSQ16_21415) | - | 4111737..4113179 (-) | 1443 | WP_339232750.1 | ATP-binding protein | - |
| NSQ16_RS21420 (NSQ16_21420) | - | 4113429..4113803 (-) | 375 | WP_032730573.1 | YdcP family protein | - |
| NSQ16_RS21425 (NSQ16_21425) | - | 4113850..4113966 (-) | 117 | WP_339232499.1 | hypothetical protein | - |
| NSQ16_RS21430 (NSQ16_21430) | - | 4114172..4114432 (-) | 261 | WP_217828095.1 | hypothetical protein | - |
| NSQ16_RS21435 (NSQ16_21435) | - | 4114486..4114746 (-) | 261 | WP_339232502.1 | hypothetical protein | - |
| NSQ16_RS21440 (NSQ16_21440) | - | 4114743..4114922 (-) | 180 | WP_017418449.1 | hypothetical protein | - |
| NSQ16_RS21445 (NSQ16_21445) | - | 4115217..4115600 (+) | 384 | WP_305935182.1 | helix-turn-helix transcriptional regulator | - |
| NSQ16_RS21450 (NSQ16_21450) | - | 4115597..4116127 (+) | 531 | WP_019716392.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NSQ16_RS21455 (NSQ16_21455) | - | 4116239..4117435 (-) | 1197 | WP_339232507.1 | Rap family tetratricopeptide repeat protein | - |
| NSQ16_RS21460 (NSQ16_21460) | - | 4117663..4118382 (-) | 720 | WP_305935184.1 | hypothetical protein | - |
| NSQ16_RS21465 (NSQ16_21465) | - | 4118604..4118681 (+) | 78 | Protein_4171 | DUF255 domain-containing protein | - |
| NSQ16_RS21470 (NSQ16_21470) | - | 4118912..4119637 (+) | 726 | WP_326256215.1 | PmeII family type II restriction endonuclease | - |
| NSQ16_RS21475 (NSQ16_21475) | - | 4119701..4121041 (-) | 1341 | WP_231592845.1 | DNA (cytosine-5-)-methyltransferase | - |
| NSQ16_RS21480 (NSQ16_21480) | - | 4121261..4121422 (+) | 162 | WP_080316903.1 | DUF255 domain-containing protein | - |
| NSQ16_RS21485 (NSQ16_21485) | - | 4121461..4123350 (+) | 1890 | WP_327836161.1 | thioredoxin domain-containing protein | - |
| NSQ16_RS21490 (NSQ16_21490) | - | 4123347..4124246 (-) | 900 | WP_015250787.1 | type II CAAX endopeptidase family protein | - |
| NSQ16_RS21495 (NSQ16_21495) | - | 4124472..4125827 (+) | 1356 | WP_048654832.1 | MFS transporter | - |
| NSQ16_RS21500 (NSQ16_21500) | - | 4125861..4126415 (-) | 555 | WP_032722825.1 | sugar O-acetyltransferase | - |
| NSQ16_RS21505 (NSQ16_21505) | - | 4126433..4126813 (-) | 381 | WP_048654831.1 | VOC family protein | - |
| NSQ16_RS21510 (NSQ16_21510) | ccpB | 4126869..4127804 (-) | 936 | WP_048654830.1 | transcriptional regulator CcpB | - |
| NSQ16_RS21515 (NSQ16_21515) | xth | 4127863..4128621 (-) | 759 | WP_029726087.1 | exodeoxyribonuclease III | - |
| NSQ16_RS21520 (NSQ16_21520) | rpsR | 4128685..4128924 (-) | 240 | WP_003219224.1 | 30S ribosomal protein S18 | - |
| NSQ16_RS21525 (NSQ16_21525) | ssbA | 4128968..4129486 (-) | 519 | WP_003219228.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18742.31 Da Isoelectric Point: 4.7621
>NTDB_id=963700 NSQ16_RS21525 WP_003219228.1 4128968..4129486(-) (ssbA) [Bacillus sp. PS108]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=963700 NSQ16_RS21525 WP_003219228.1 4128968..4129486(-) (ssbA) [Bacillus sp. PS108]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.192 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
61.628 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
35.519 |
100 |
0.378 |