Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   NSU15_RS06490 Genome accession   NZ_CP150154
Coordinates   1445649..1446596 (+) Length   315 a.a.
NCBI ID   WP_042125010.1    Uniprot ID   A0A089IDW0
Organism   Paenibacillus sp. FSL E2-0201     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1440649..1451596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU15_RS06460 (NSU15_06460) - 1440814..1441680 (+) 867 WP_339289650.1 GNAT family N-acetyltransferase -
  NSU15_RS06465 (NSU15_06465) - 1441943..1443037 (-) 1095 WP_339289652.1 Xaa-Pro peptidase family protein -
  NSU15_RS06470 (NSU15_06470) - 1443331..1444176 (+) 846 WP_339289653.1 SDR family oxidoreductase -
  NSU15_RS06475 (NSU15_06475) - 1444198..1444701 (+) 504 WP_339289654.1 N-acetyltransferase family protein -
  NSU15_RS06480 (NSU15_06480) - 1444720..1445064 (-) 345 WP_076121703.1 helix-turn-helix domain-containing protein -
  NSU15_RS06485 (NSU15_06485) - 1445156..1445416 (+) 261 WP_076121701.1 YqkE family protein -
  NSU15_RS06490 (NSU15_06490) ceuB 1445649..1446596 (+) 948 WP_042125010.1 ABC transporter permease Machinery gene
  NSU15_RS06495 (NSU15_06495) - 1446599..1447543 (+) 945 WP_076121699.1 iron chelate uptake ABC transporter family permease subunit -
  NSU15_RS06500 (NSU15_06500) - 1447537..1448292 (+) 756 WP_042125014.1 ABC transporter ATP-binding protein -
  NSU15_RS06505 (NSU15_06505) - 1448415..1449407 (+) 993 WP_339289658.1 siderophore ABC transporter substrate-binding protein -
  NSU15_RS06510 (NSU15_06510) - 1449605..1450108 (+) 504 WP_042185661.1 sigma-70 family RNA polymerase sigma factor -
  NSU15_RS06515 (NSU15_06515) - 1450101..1451294 (+) 1194 WP_076121697.1 anti-sigma factor -

Sequence


Protein


Download         Length: 315 a.a.        Molecular weight: 34515.72 Da        Isoelectric Point: 10.0524

>NTDB_id=963596 NSU15_RS06490 WP_042125010.1 1445649..1446596(+) (ceuB) [Paenibacillus sp. FSL E2-0201]
MKLKYLSLLLIVFSFISLFIGVKDISPLDLFSLTESQMQTLLVSRIPRLAALIIAGVSMSIAGLIMQQLSRNKFVSPTTA
GTMDSAKFGILVSLMLFTGATPMQKLLVAFVFALLGTFIFMRILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKNDLV
QNISSWMLGDFSTIIKGQYELIYISIPLVILAYVFANKFTVAGMGEDFSVNLGMNYKAVVNVGLVIVALISSVVILTVGT
IPFLGLVVPNIVTLYIGDNLKKNLAHTAILGAVFLLFCDILGRLIIYPYEISISLTVGVIGSGLFIYLLMRRKAN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=963596 NSU15_RS06490 WP_042125010.1 1445649..1446596(+) (ceuB) [Paenibacillus sp. FSL E2-0201]
ATGAAACTAAAATATTTGTCCCTACTTCTAATAGTATTCTCATTTATATCTTTGTTTATAGGCGTAAAAGATATTTCACC
TTTGGATCTTTTTTCGCTTACGGAATCTCAGATGCAGACTCTGCTAGTCAGCCGGATTCCACGCTTAGCTGCACTGATTA
TAGCTGGTGTAAGCATGAGTATTGCCGGATTAATTATGCAGCAATTATCACGAAATAAATTCGTTTCTCCCACTACGGCG
GGCACGATGGACTCCGCGAAATTCGGTATTCTCGTGTCCCTGATGCTGTTCACAGGGGCGACGCCGATGCAGAAGCTGCT
CGTTGCTTTTGTTTTTGCCCTATTGGGAACATTTATATTTATGAGAATCTTGGATCGGATCAAGTTCAAGGATAGTATTT
TCATCCCGCTGGTCGGACTCATGTTCGGGAACATTGTAGGCTCGATTACTACATTTTTTGCTTACAAAAATGATTTGGTT
CAGAATATCTCGTCTTGGATGCTTGGCGATTTCTCAACGATTATTAAGGGTCAATACGAATTAATCTATATCAGTATTCC
GCTTGTTATTCTCGCGTATGTTTTCGCCAATAAGTTCACAGTTGCCGGTATGGGGGAGGATTTCTCCGTTAATCTCGGTA
TGAACTACAAAGCGGTTGTGAACGTAGGATTGGTGATTGTAGCGTTAATCTCTTCAGTAGTTATTTTAACCGTAGGTACA
ATTCCTTTCCTAGGTCTTGTTGTACCTAACATAGTAACGCTATACATAGGCGATAACTTGAAAAAAAATCTGGCGCATAC
TGCCATTCTCGGCGCGGTGTTCCTCCTGTTCTGTGATATTCTGGGCAGGCTCATTATATATCCATACGAAATATCAATCA
GTCTCACGGTAGGCGTCATCGGAAGTGGTCTGTTTATCTACTTGCTGATGAGAAGAAAGGCGAATTAG

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A089IDW0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.051

99.683

0.559