Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   WHK83_RS01720 Genome accession   NZ_CP150097
Coordinates   374570..375052 (+) Length   160 a.a.
NCBI ID   WP_001046413.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HAU425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 369570..380052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS01710 pilX 369873..370691 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  WHK83_RS01715 pilY1 370703..374557 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  WHK83_RS01720 pilY2 374570..375052 (+) 483 WP_001046413.1 type IV pilin protein Machinery gene
  WHK83_RS01725 pilE 375049..375474 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene
  WHK83_RS01730 rpsP 375621..375872 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  WHK83_RS01735 rimM 375892..376440 (+) 549 WP_272325579.1 ribosome maturation factor RimM -
  WHK83_RS01740 trmD 376486..377226 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  WHK83_RS01745 rplS 377434..377802 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  WHK83_RS01750 - 377855..378796 (-) 942 WP_098713316.1 triacylglycerol lipase -
  WHK83_RS01755 - 378911..379945 (-) 1035 WP_002062194.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17602.87 Da        Isoelectric Point: 8.8351

>NTDB_id=962828 WHK83_RS01720 WP_001046413.1 374570..375052(+) (pilY2) [Acinetobacter baumannii strain HAU425]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTRGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=962828 WHK83_RS01720 WP_001046413.1 374570..375052(+) (pilY2) [Acinetobacter baumannii strain HAU425]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCAGAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCTGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

39.535

100

0.425