Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   WHK83_RS01725 Genome accession   NZ_CP150097
Coordinates   375049..375474 (+) Length   141 a.a.
NCBI ID   WP_005130737.1    Uniprot ID   A0AAX0TXJ3
Organism   Acinetobacter baumannii strain HAU425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 370049..380474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS01715 pilY1 370703..374557 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  WHK83_RS01720 pilY2 374570..375052 (+) 483 WP_001046413.1 type IV pilin protein Machinery gene
  WHK83_RS01725 pilE 375049..375474 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene
  WHK83_RS01730 rpsP 375621..375872 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  WHK83_RS01735 rimM 375892..376440 (+) 549 WP_272325579.1 ribosome maturation factor RimM -
  WHK83_RS01740 trmD 376486..377226 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  WHK83_RS01745 rplS 377434..377802 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  WHK83_RS01750 - 377855..378796 (-) 942 WP_098713316.1 triacylglycerol lipase -
  WHK83_RS01755 - 378911..379945 (-) 1035 WP_002062194.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15191.34 Da        Isoelectric Point: 7.1291

>NTDB_id=962829 WHK83_RS01725 WP_005130737.1 375049..375474(+) (pilE) [Acinetobacter baumannii strain HAU425]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLHKGHRTAVQSEMMNIAQTLESQKMVNNRYPSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=962829 WHK83_RS01725 WP_005130737.1 375049..375474(+) (pilE) [Acinetobacter baumannii strain HAU425]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCATAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATGGTGAATAACCGTTATCCCTCAAATGCAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

97.163

100

0.972
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511