Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   WHK83_RS01710 Genome accession   NZ_CP150097
Coordinates   369873..370691 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain HAU425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364873..375691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS01675 - 365455..365585 (-) 131 Protein_321 hypothetical protein -
  WHK83_RS01680 rpoZ 365624..365902 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  WHK83_RS01685 gmk 365975..366604 (-) 630 WP_023896139.1 guanylate kinase -
  WHK83_RS01690 ispH 366727..367677 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  WHK83_RS01695 fimU 367847..368320 (+) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  WHK83_RS01700 pilV 368314..368874 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  WHK83_RS01705 pilW 368875..369876 (+) 1002 WP_023896140.1 PilW family protein Machinery gene
  WHK83_RS01710 pilX 369873..370691 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  WHK83_RS01715 pilY1 370703..374557 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  WHK83_RS01720 pilY2 374570..375052 (+) 483 WP_001046413.1 type IV pilin protein Machinery gene
  WHK83_RS01725 pilE 375049..375474 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=962826 WHK83_RS01710 WP_000149377.1 369873..370691(+) (pilX) [Acinetobacter baumannii strain HAU425]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=962826 WHK83_RS01710 WP_000149377.1 369873..370691(+) (pilX) [Acinetobacter baumannii strain HAU425]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTAGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989