Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   WHK83_RS01695 Genome accession   NZ_CP150097
Coordinates   367847..368320 (+) Length   157 a.a.
NCBI ID   WP_001214067.1    Uniprot ID   A0A7U3Y304
Organism   Acinetobacter baumannii strain HAU425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 362847..373320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS01670 - 363310..365415 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  WHK83_RS01675 - 365455..365585 (-) 131 Protein_321 hypothetical protein -
  WHK83_RS01680 rpoZ 365624..365902 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  WHK83_RS01685 gmk 365975..366604 (-) 630 WP_023896139.1 guanylate kinase -
  WHK83_RS01690 ispH 366727..367677 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  WHK83_RS01695 fimU 367847..368320 (+) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  WHK83_RS01700 pilV 368314..368874 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  WHK83_RS01705 pilW 368875..369876 (+) 1002 WP_023896140.1 PilW family protein Machinery gene
  WHK83_RS01710 pilX 369873..370691 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.40 Da        Isoelectric Point: 8.5355

>NTDB_id=962823 WHK83_RS01695 WP_001214067.1 367847..368320(+) (fimU) [Acinetobacter baumannii strain HAU425]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=962823 WHK83_RS01695 WP_001214067.1 367847..368320(+) (fimU) [Acinetobacter baumannii strain HAU425]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGGTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y304

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994