Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHK83_RS01000 Genome accession   NZ_CP150097
Coordinates   223912..224493 (+) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain HAU425     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 218912..229493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS00975 - 219531..219884 (+) 354 WP_000580165.1 DUF1304 domain-containing protein -
  WHK83_RS00980 - 219937..220278 (+) 342 WP_000263330.1 GlpM family protein -
  WHK83_RS00985 tenA 220329..221003 (-) 675 WP_000899418.1 thiaminase II -
  WHK83_RS00990 - 221267..222349 (+) 1083 WP_406859695.1 DUF475 domain-containing protein -
  WHK83_RS00995 - 222496..223860 (+) 1365 WP_000980460.1 MFS transporter -
  WHK83_RS01000 ssb 223912..224493 (+) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  WHK83_RS01005 - 225065..226633 (-) 1569 WP_406859697.1 hypothetical protein -
  WHK83_RS01010 - 226637..227710 (-) 1074 WP_272325536.1 hypothetical protein -
  WHK83_RS01015 - 227990..228772 (-) 783 WP_272325538.1 hypothetical protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=962816 WHK83_RS01000 WP_001215080.1 223912..224493(+) (ssb) [Acinetobacter baumannii strain HAU425]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=962816 WHK83_RS01000 WP_001215080.1 223912..224493(+) (ssb) [Acinetobacter baumannii strain HAU425]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGTTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATAGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTACCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGTAACAGCCCGCAAGGTGGTGGTTTTGCCCCTAAAGCACCACAACAACCAGCGTCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394