Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   WKQ99_RS05075 Genome accession   NZ_CP149965
Coordinates   1085560..1086906 (-) Length   448 a.a.
NCBI ID   WP_339101032.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain EMP42     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080560..1091906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKQ99_RS05060 (WKQ99_05060) - 1080803..1083892 (+) 3090 WP_339101030.1 PilC/PilY family type IV pilus protein -
  WKQ99_RS05065 (WKQ99_05065) - 1083908..1084309 (+) 402 WP_110646717.1 type IV pilin protein -
  WKQ99_RS05070 (WKQ99_05070) thiO 1084367..1085467 (+) 1101 WP_339101031.1 glycine oxidase ThiO -
  WKQ99_RS05075 (WKQ99_05075) pilR 1085560..1086906 (-) 1347 WP_339101032.1 sigma-54 dependent transcriptional regulator Regulator
  WKQ99_RS05080 (WKQ99_05080) pilS 1086903..1088492 (-) 1590 WP_339101033.1 ATP-binding protein Regulator
  WKQ99_RS05085 (WKQ99_05085) - 1088482..1088715 (-) 234 WP_122706068.1 PP0621 family protein -
  WKQ99_RS05090 (WKQ99_05090) - 1088842..1089858 (-) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  WKQ99_RS05095 (WKQ99_05095) rluD 1090010..1090972 (+) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  WKQ99_RS05100 (WKQ99_05100) pgeF 1090969..1091691 (+) 723 WP_339101034.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50102.41 Da        Isoelectric Point: 6.5117

>NTDB_id=962365 WKQ99_RS05075 WP_339101032.1 1085560..1086906(-) (pilR) [Pseudomonas atacamensis strain EMP42]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRAPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGPSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQVDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=962365 WKQ99_RS05075 WP_339101032.1 1085560..1086906(-) (pilR) [Pseudomonas atacamensis strain EMP42]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCCCGCAATCTGGGCGAAGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGCTCCACACCTGCCG
GTGGCGATGATCACGGCGTACGGAAGCCTGGAAACTGCGATCAATGCGCTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAACTGCCGCGCTTGCGCGAACTGGTCAGCTCGGCGCTACGCCTGCCGACAGCGGGTGGCCCGAGCACCGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCCGCCAATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCACGCAGTCAGGCA
CCGGTCTACATCAGCGGCGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATCCACGAACAAGGTCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCATCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GTTTCACTGGAGCCGTCGAAGACAAGCCGGGGCTGTTTCAAGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GATTTGCCACTGTCGATGCAAGTGAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTGGACGTGCGCATCCTTTGCGCAACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGTGTGCCGTCCCTGCGCGAACGCCGAGACGACATTGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAATGTGCGCGAACTGGAGAACGTCCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCAGATCTGACGCAGGTCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAACGCAAACTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCAATGCGCTATCGGCTGAAGAAGTTGGGCCTGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

98.884

0.772
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507
  luxO Vibrio cholerae strain A1552

39.853

91.295

0.364