Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   WKQ99_RS05080 Genome accession   NZ_CP149965
Coordinates   1086903..1088492 (-) Length   529 a.a.
NCBI ID   WP_339101033.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain EMP42     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081903..1093492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKQ99_RS05065 (WKQ99_05065) - 1083908..1084309 (+) 402 WP_110646717.1 type IV pilin protein -
  WKQ99_RS05070 (WKQ99_05070) thiO 1084367..1085467 (+) 1101 WP_339101031.1 glycine oxidase ThiO -
  WKQ99_RS05075 (WKQ99_05075) pilR 1085560..1086906 (-) 1347 WP_339101032.1 sigma-54 dependent transcriptional regulator Regulator
  WKQ99_RS05080 (WKQ99_05080) pilS 1086903..1088492 (-) 1590 WP_339101033.1 ATP-binding protein Regulator
  WKQ99_RS05085 (WKQ99_05085) - 1088482..1088715 (-) 234 WP_122706068.1 PP0621 family protein -
  WKQ99_RS05090 (WKQ99_05090) - 1088842..1089858 (-) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  WKQ99_RS05095 (WKQ99_05095) rluD 1090010..1090972 (+) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  WKQ99_RS05100 (WKQ99_05100) pgeF 1090969..1091691 (+) 723 WP_339101034.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58684.38 Da        Isoelectric Point: 7.1367

>NTDB_id=962366 WKQ99_RS05080 WP_339101033.1 1086903..1088492(-) (pilS) [Pseudomonas atacamensis strain EMP42]
MVAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSRLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQADVWLALFVDPESQLAVLEVQDNGPGVSAEEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=962366 WKQ99_RS05080 WP_339101033.1 1086903..1088492(-) (pilS) [Pseudomonas atacamensis strain EMP42]
GTGGTCGCTGAGGCCGCTAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATCATCAATATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCCCTCGTCGACGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATCT
GCTGGTGGTCTCGGTGGCAATCAGCAACACCCTGCTACGCCGACGCATCGGCCTGCTGATTGCCGCCATCGCGGCGATCG
GCATTGTCGGCCTGAGCTTTCTGCTGGGTCTGAGCCGCCCCTTGAGCGCCAACGCCTACTTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTCGCCGCCTCGCTGCTGGTGCAAGGGTTGATCCGCCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAAGTGGTCAGCCTGGAGGCGCTGAACGCGTTGATCCTGCAACGCATGCGCACGGGGATTCTGGTGCTCGACG
AGCAACGTCGGGTGCAACTGGCCAATCACAGCGCGCAGAGTCTGCTCGGCCATAGTCGCCTGCAAGGTCATTTGATCGAC
GAGTATTCCCCCGCATTGGTCGAGCGTCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATTCC
CGGCAATGGCCTTGAGCTGCAACCCAGCTTCATCGCTCTCGAGCAGAGTCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAGGCGCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCACAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAACCCGCGAGCAGGCCAACGAGCGC
CAGCACATTCATCTGCGAATCAATTCCGGCGATTTCACCACGCTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATCCGCAACGCCTGGCGTCACAGTGCGCAACTGCACGAGCAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCCG
AAAGCCAATTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGAGGAACAGGCGCATCTGTTTGAGCCG
TTCTTCACTACCAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599