Detailed information NTG0962358

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: WKQ99_RS01820
• Genome accession: NZ_CP149965
• Coordinates: 402948..404441 (-)
• Length: 497 a.a.
• NCBI ID: WP_110644495.1
• Uniprot ID: -
• Organism: Pseudomonas atacamensis strain EMP42
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 397948..409441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WKQ99_RS01805 (WKQ99_01805)	-	398457..399377 (+)	921	WP_016772577.1	LysR substrate-binding domain-containing protein	-
WKQ99_RS01810 (WKQ99_01810)	-	399565..401541 (+)	1977	WP_339100872.1	methyl-accepting chemotaxis protein	-
WKQ99_RS01815 (WKQ99_01815)	-	401737..402951 (+)	1215	WP_339100873.1	aldose 1-epimerase family protein	-
WKQ99_RS01820 (WKQ99_01820)	comM	402948..404441 (-)	1494	WP_110644495.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
WKQ99_RS01825 (WKQ99_01825)	-	405086..405283 (+)	198	WP_339100874.1	hypothetical protein	-
WKQ99_RS01830 (WKQ99_01830)	-	405541..405810 (+)	270	WP_339100875.1	HigA family addiction module antitoxin	-
WKQ99_RS01835 (WKQ99_01835)	-	405805..406326 (-)	522	Protein_366	Bro-N domain-containing protein	-
WKQ99_RS01840 (WKQ99_01840)	-	406689..406949 (-)	261	WP_008086041.1	accessory factor UbiK family protein	-
WKQ99_RS01845 (WKQ99_01845)	glnK	407344..407682 (+)	339	WP_002555808.1	P-II family nitrogen regulator	-
WKQ99_RS01850 (WKQ99_01850)	-	407720..409057 (+)	1338	WP_041476939.1	ammonium transporter	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 52837.02 Da
• Isoelectric Point: 8.0086

>NTDB_id=962358 WKQ99_RS01820 WP_110644495.1 402948..404441(-) (comM) [Pseudomonas atacamensis strain EMP42]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDEVECLGELALSGAVRPVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLMHAAKPYPDLNEVQGQTAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAAKP
GENSASAAALVAEARERQQKRQGCANAFLDLPGLKRHCTLSTADEKWLEAACERLILSLRSAHRLLKVARTLADLEQADA
ITREHLAEALQYRPATP

Nucleotide

• Length: 1494 bp

>NTDB_id=962358 WKQ99_RS01820 WP_110644495.1 402948..404441(-) (comM) [Pseudomonas atacamensis strain EMP42]
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGAAGCTCCAGCCGTCACCGTCGAAGTCCATCTGGCCAA
CGGTCTGCCGTCGCTGACCATGGTCGGCCTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGATCGGGTGCGCAGTGCGATCA
TCAATTCCGGGCTGCAATTTCCGGCGCGGCGGATCACCTTGAATCTGGCGCCGGCGGACCTGCCCAAGGATGGCGGACGC
TTCGATCTGGCAATTGCCTTGGGGATTTTGTCGGCCAGCGTGCAGGTGCCGTGTCTGACGCTGGACGAGGTGGAATGTCT
GGGTGAATTGGCATTGTCCGGTGCCGTGCGACCAGTGCGTGGCGTGCTGCCGGCGGCACTGGCGGCGCGCAAGGCCGGGC
GGGCGTTGGTGGTGCCTCGAGCGAATGCGGAAGAGGCGTGCCTGGCTTCGGGGCTGAAAGTGTTCGCAGTCGATCACTTG
CTGGAAGCGGTGGCGCATTTCAATGGGCACACACCGGTCGAGCCTTACGTTTCCGATGGTTTGATGCACGCTGCCAAACC
CTATCCCGACCTTAACGAGGTGCAGGGGCAGACAGCCGCCAAACGCGCACTGCTGATTGCCGCAGCGGGAGCTCACAATT
TGTTGTTCAGCGGGCCACCGGGAACCGGCAAGACGCTGCTGGCCAGTCGTCTGCCAGGATTACTGCCGCCGCTATCCGAA
TGCGAGGCGCTGGAAGTGGCAGCGATTCAATCGGTCGCCAGCGGGGTTCCCTTGACTCACTGGCCGCAGCGGCCGTTCAG
GCAACCGCACCATTCGGCTTCAGGGCCGGCATTGGTCGGTGGCAGCTCGAAACCGCAACCCGGCGAAATCACCCTCGCCC
ACCATGGCGTACTGTTTCTCGATGAGTTGCCGGAGTTTGATCGCAAGGTTCTGGAAGTGCTGCGCGAGCCGTTGGAGTCC
GGGCATATCGTCATCGCTCGGGCCAAGGATCGCGTGCGTTTCCCCGCACGGTTTCAATTGGTGGCAGCGATGAATCCGTG
TCCCTGTGGATATCTTGGCGAACCCAGCGGCAAATGCTCGTGCACACCGGACATGGTCCAGCGCTATCGCAACAAGCTGT
CAGGGCCGCTGCTGGATCGGATTGATCTGCACCTGACCGTCGCGCGGGAGGCAACCGCATTGAATCCGGCAGCCAAGCCC
GGCGAAAACAGCGCCAGCGCTGCGGCGTTGGTGGCCGAAGCGCGGGAGCGTCAGCAGAAACGTCAGGGCTGTGCCAATGC
GTTTCTCGATCTGCCGGGGCTCAAGCGTCACTGCACGTTATCCACAGCCGATGAAAAATGGCTGGAAGCGGCCTGCGAGC
GATTGATCCTGTCGCTGCGCTCGGCGCATCGCCTGCTCAAGGTCGCGCGCACGCTGGCGGATCTTGAACAGGCCGATGCG
ATTACCCGCGAGCATCTGGCCGAGGCACTGCAATACCGGCCGGCGACACCTTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (401-493)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	54.545	99.598	0.543
comM	Vibrio campbellii strain DS40M4	54.343	99.598	0.541
comM	Haemophilus influenzae Rd KW20	52.906	100	0.531
comM	Glaesserella parasuis strain SC1401	52.39	100	0.529
comM	Legionella pneumophila str. Paris	50.402	100	0.505
comM	Legionella pneumophila strain ERS1305867	50.402	100	0.505
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.491	100	0.457